Copyright	(c) 2015-2016 Brendan Hay
License	Mozilla Public License, v. 2.0.
Maintainer	Brendan Hay <brendan.g.hay@gmail.com>
Stability	auto-generated
Portability	non-portable (GHC extensions)
Safe Haskell	None
Language	Haskell2010

Network.Google.Genomics.Types

Contents

Service Configuration
OAuth Scopes
ImportVariantsRequestInfoMergeConfig
ReadInfo
Exon
Status
OperationSchema
VariantAnnotationEffect
Variant
Annotation
ListBasesResponse
ListOperationsResponse
GetIAMPolicyRequest
CancelOperationRequest
DataSet
Read'
OperationMetadataLabels
VariantCall
BatchCreateAnnotationsRequest
MergeVariantsRequest
ReadGroup
Operation
SearchReferenceSetsRequest
Empty
AnnotationSetType
SearchReferencesResponse
VariantSetMetadata
CallSet
CoverageBucket
VariantAnnotation
VariantAnnotationClinicalSignificance
SearchReadGroupSetsRequest
Reference
VariantCallInfo
ReadGroupInfo
StatusDetailsItem
SearchCallSetsResponse
SetIAMPolicyRequest
SearchReadsRequest
OperationMetadataRequest
MergeVariantsRequestInfoMergeConfig
VariantInfo
Experiment
SearchVariantSetsRequest
AnnotationInfo
SearchAnnotationsResponse
SearchAnnotationSetsRequest
ImportReadGroupSetsRequestPartitionStrategy
SearchVariantsResponse
OperationMetadataRuntimeMetadata
ClinicalCondition
SearchCallSetsRequest
Entry
SearchReadsResponse
Program
SearchReferencesRequest
BatchCreateAnnotationsResponse
CodingSequence
AnnotationType
SearchReferenceSetsResponse
Range
ReadGroupSet
Xgafv
ExportReadGroupSetRequest
ImportVariantsResponse
ListCoverageBucketsResponse
TestIAMPermissionsRequest
ImportReadGroupSetsResponse
LinearAlignment
AnnotationSet
VariantSet
CigarUnitOperation
VariantSetMetadataType
TestIAMPermissionsResponse
ListDataSetsResponse
ImportReadGroupSetsRequest
ImportVariantsRequest
ExternalId
CigarUnit
Policy
ExportVariantSetRequest
VariantAnnotationType
OperationMetadata
ImportVariantsRequestFormat
SearchAnnotationsRequest
SearchVariantSetsResponse
SearchVariantsRequest
ExportVariantSetRequestFormat
AnnotationSetInfo
ComputeEngine
SearchAnnotationSetsResponse
CallSetInfo
VariantSetMetadataInfo
OperationResponse
Transcript
OperationEvent
ReferenceBound
UndeleteDataSetRequest
Binding
Position
RuntimeMetadata
SearchReadGroupSetsResponse
ReadGroupSetInfo
ReferenceSet

Description

Synopsis

Service Configuration

genomicsService :: ServiceConfig #

Default request referring to version v1 of the Genomics API. This contains the host and root path used as a starting point for constructing service requests.

OAuth Scopes

genomicsScope :: Proxy '["https://www.googleapis.com/auth/genomics"] #

View and manage Genomics data

cloudPlatformScope :: Proxy '["https://www.googleapis.com/auth/cloud-platform"] #

View and manage your data across Google Cloud Platform services

genomicsReadOnlyScope :: Proxy '["https://www.googleapis.com/auth/genomics.readonly"] #

View Genomics data

storageReadWriteScope :: Proxy '["https://www.googleapis.com/auth/devstorage.read_write"] #

Manage your data in Google Cloud Storage

bigQueryScope :: Proxy '["https://www.googleapis.com/auth/bigquery"] #

View and manage your data in Google BigQuery

ImportVariantsRequestInfoMergeConfig

data ImportVariantsRequestInfoMergeConfig #

A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job.

See: importVariantsRequestInfoMergeConfig smart constructor.

Instances

Eq ImportVariantsRequestInfoMergeConfig #
Methods (==) :: ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig -> Bool # (/=) :: ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig -> Bool #
Data ImportVariantsRequestInfoMergeConfig #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequestInfoMergeConfig -> c ImportVariantsRequestInfoMergeConfig # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequestInfoMergeConfig # toConstr :: ImportVariantsRequestInfoMergeConfig -> Constr # dataTypeOf :: ImportVariantsRequestInfoMergeConfig -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequestInfoMergeConfig) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequestInfoMergeConfig) # gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequestInfoMergeConfig -> ImportVariantsRequestInfoMergeConfig # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestInfoMergeConfig -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestInfoMergeConfig -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequestInfoMergeConfig -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequestInfoMergeConfig -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestInfoMergeConfig -> m ImportVariantsRequestInfoMergeConfig #
Show ImportVariantsRequestInfoMergeConfig #
Methods showsPrec :: Int -> ImportVariantsRequestInfoMergeConfig -> ShowS # show :: ImportVariantsRequestInfoMergeConfig -> String # showList :: [ImportVariantsRequestInfoMergeConfig] -> ShowS #
Generic ImportVariantsRequestInfoMergeConfig #
Associated Types type Rep ImportVariantsRequestInfoMergeConfig :: * -> * # Methods from :: ImportVariantsRequestInfoMergeConfig -> Rep ImportVariantsRequestInfoMergeConfig x # to :: Rep ImportVariantsRequestInfoMergeConfig x -> ImportVariantsRequestInfoMergeConfig #
ToJSON ImportVariantsRequestInfoMergeConfig #
Methods toJSON :: ImportVariantsRequestInfoMergeConfig -> Value # toEncoding :: ImportVariantsRequestInfoMergeConfig -> Encoding # toJSONList :: [ImportVariantsRequestInfoMergeConfig] -> Value # toEncodingList :: [ImportVariantsRequestInfoMergeConfig] -> Encoding #
FromJSON ImportVariantsRequestInfoMergeConfig #
Methods parseJSON :: Value -> Parser ImportVariantsRequestInfoMergeConfig # parseJSONList :: Value -> Parser [ImportVariantsRequestInfoMergeConfig] #
type Rep ImportVariantsRequestInfoMergeConfig #
type Rep ImportVariantsRequestInfoMergeConfig = D1 (MetaData "ImportVariantsRequestInfoMergeConfig" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ImportVariantsRequestInfoMergeConfig'" PrefixI True) (S1 (MetaSel (Just Symbol "_ivrimcAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

importVariantsRequestInfoMergeConfig #

Arguments

:: HashMap Text Text	`ivrimcAddtional`
-> ImportVariantsRequestInfoMergeConfig

Creates a value of ImportVariantsRequestInfoMergeConfig with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ivrimcAddtional

ivrimcAddtional :: Lens' ImportVariantsRequestInfoMergeConfig (HashMap Text Text) #

ReadInfo

data ReadInfo #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: readInfo smart constructor.

Instances

Eq ReadInfo #
Methods (==) :: ReadInfo -> ReadInfo -> Bool # (/=) :: ReadInfo -> ReadInfo -> Bool #
Data ReadInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadInfo -> c ReadInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadInfo # toConstr :: ReadInfo -> Constr # dataTypeOf :: ReadInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReadInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadInfo) # gmapT :: (forall b. Data b => b -> b) -> ReadInfo -> ReadInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> ReadInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadInfo -> m ReadInfo #
Show ReadInfo #
Methods showsPrec :: Int -> ReadInfo -> ShowS # show :: ReadInfo -> String # showList :: [ReadInfo] -> ShowS #
Generic ReadInfo #
Associated Types type Rep ReadInfo :: * -> * # Methods from :: ReadInfo -> Rep ReadInfo x # to :: Rep ReadInfo x -> ReadInfo #
ToJSON ReadInfo #
Methods toJSON :: ReadInfo -> Value # toEncoding :: ReadInfo -> Encoding # toJSONList :: [ReadInfo] -> Value # toEncodingList :: [ReadInfo] -> Encoding #
FromJSON ReadInfo #
Methods parseJSON :: Value -> Parser ReadInfo # parseJSONList :: Value -> Parser [ReadInfo] #
type Rep ReadInfo #
type Rep ReadInfo = D1 (MetaData "ReadInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ReadInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_riAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readInfo #

Arguments

:: HashMap Text [JSONValue]	`riAddtional`
-> ReadInfo

Creates a value of ReadInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

riAddtional

riAddtional :: Lens' ReadInfo (HashMap Text [JSONValue]) #

Exon

data Exon #

Instances

Eq Exon #
Methods (==) :: Exon -> Exon -> Bool # (/=) :: Exon -> Exon -> Bool #
Data Exon #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Exon -> c Exon # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Exon # toConstr :: Exon -> Constr # dataTypeOf :: Exon -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Exon) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Exon) # gmapT :: (forall b. Data b => b -> b) -> Exon -> Exon # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Exon -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Exon -> r # gmapQ :: (forall d. Data d => d -> u) -> Exon -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Exon -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Exon -> m Exon # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Exon -> m Exon # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Exon -> m Exon #
Show Exon #
Methods showsPrec :: Int -> Exon -> ShowS # show :: Exon -> String # showList :: [Exon] -> ShowS #
Generic Exon #
Associated Types type Rep Exon :: * -> * # Methods from :: Exon -> Rep Exon x # to :: Rep Exon x -> Exon #
ToJSON Exon #
Methods toJSON :: Exon -> Value # toEncoding :: Exon -> Encoding # toJSONList :: [Exon] -> Value # toEncodingList :: [Exon] -> Encoding #
FromJSON Exon #
Methods parseJSON :: Value -> Parser Exon # parseJSONList :: Value -> Parser [Exon] #
type Rep Exon #
type Rep Exon = D1 (MetaData "Exon" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Exon'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_eStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_eEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_eFrame") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

exon :: Exon #

Creates a value of Exon with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

eStart :: Lens' Exon (Maybe Int64) #

The start position of the exon on this annotation's reference sequence, 0-based inclusive. Note that this is relative to the reference start, and **not** the containing annotation start.

eEnd :: Lens' Exon (Maybe Int64) #

The end position of the exon on this annotation's reference sequence, 0-based exclusive. Note that this is relative to the reference start, and *not* the containing annotation start.

eFrame :: Lens' Exon (Maybe Int32) #

The frame of this exon. Contains a value of 0, 1, or 2, which indicates the offset of the first coding base of the exon within the reading frame of the coding DNA sequence, if any. This field is dependent on the strandedness of this annotation (see Annotation.reverse_strand). For forward stranded annotations, this offset is relative to the exon.start. For reverse strand annotations, this offset is relative to the exon.end `- 1`. Unset if this exon does not intersect the coding sequence. Upon creation of a transcript, the frame must be populated for all or none of the coding exons.

Status

data Status #

The `Status` type defines a logical error model that is suitable for different programming environments, including REST APIs and RPC APIs. It is used by gRPC. The error model is designed to be: - Simple to use and understand for most users - Flexible enough to meet unexpected needs # Overview The `Status` message contains three pieces of data: error code, error message, and error details. The error code should be an enum value of google.rpc.Code, but it may accept additional error codes if needed. The error message should be a developer-facing English message that helps developers *understand* and *resolve* the error. If a localized user-facing error message is needed, put the localized message in the error details or localize it in the client. The optional error details may contain arbitrary information about the error. There is a predefined set of error detail types in the package `google.rpc` which can be used for common error conditions. # Language mapping The `Status` message is the logical representation of the error model, but it is not necessarily the actual wire format. When the `Status` message is exposed in different client libraries and different wire protocols, it can be mapped differently. For example, it will likely be mapped to some exceptions in Java, but more likely mapped to some error codes in C. # Other uses The error model and the `Status` message can be used in a variety of environments, either with or without APIs, to provide a consistent developer experience across different environments. Example uses of this error model include: - Partial errors. If a service needs to return partial errors to the client, it may embed the `Status` in the normal response to indicate the partial errors. - Workflow errors. A typical workflow has multiple steps. Each step may have a `Status` message for error reporting purpose. - Batch operations. If a client uses batch request and batch response, the `Status` message should be used directly inside batch response, one for each error sub-response. - Asynchronous operations. If an API call embeds asynchronous operation results in its response, the status of those operations should be represented directly using the `Status` message. - Logging. If some API errors are stored in logs, the message `Status` could be used directly after any stripping needed for security/privacy reasons.

See: status smart constructor.

Instances

Eq Status #
Methods (==) :: Status -> Status -> Bool # (/=) :: Status -> Status -> Bool #
Data Status #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Status -> c Status # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Status # toConstr :: Status -> Constr # dataTypeOf :: Status -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Status) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Status) # gmapT :: (forall b. Data b => b -> b) -> Status -> Status # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Status -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Status -> r # gmapQ :: (forall d. Data d => d -> u) -> Status -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Status -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Status -> m Status # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Status -> m Status # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Status -> m Status #
Show Status #
Methods showsPrec :: Int -> Status -> ShowS # show :: Status -> String # showList :: [Status] -> ShowS #
Generic Status #
Associated Types type Rep Status :: * -> * # Methods from :: Status -> Rep Status x # to :: Rep Status x -> Status #
ToJSON Status #
Methods toJSON :: Status -> Value # toEncoding :: Status -> Encoding # toJSONList :: [Status] -> Value # toEncodingList :: [Status] -> Encoding #
FromJSON Status #
Methods parseJSON :: Value -> Parser Status # parseJSONList :: Value -> Parser [Status] #
type Rep Status #
type Rep Status = D1 (MetaData "Status" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Status'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_sDetails") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [StatusDetailsItem]))) ((::) (S1 (MetaSel (Just Symbol "_sCode") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_sMessage") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

status :: Status #

Creates a value of Status with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sDetails :: Lens' Status [StatusDetailsItem] #

A list of messages that carry the error details. There will be a common set of message types for APIs to use.

sCode :: Lens' Status (Maybe Int32) #

The status code, which should be an enum value of google.rpc.Code.

sMessage :: Lens' Status (Maybe Text) #

A developer-facing error message, which should be in English. Any user-facing error message should be localized and sent in the google.rpc.Status.details field, or localized by the client.

OperationSchema

data OperationSchema #

An OperationMetadata object. This will always be returned with the Operation.

See: operationSchema smart constructor.

Instances

Eq OperationSchema #
Methods (==) :: OperationSchema -> OperationSchema -> Bool # (/=) :: OperationSchema -> OperationSchema -> Bool #
Data OperationSchema #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationSchema -> c OperationSchema # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationSchema # toConstr :: OperationSchema -> Constr # dataTypeOf :: OperationSchema -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationSchema) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationSchema) # gmapT :: (forall b. Data b => b -> b) -> OperationSchema -> OperationSchema # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationSchema -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationSchema -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationSchema -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationSchema -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationSchema -> m OperationSchema #
Show OperationSchema #
Methods showsPrec :: Int -> OperationSchema -> ShowS # show :: OperationSchema -> String # showList :: [OperationSchema] -> ShowS #
Generic OperationSchema #
Associated Types type Rep OperationSchema :: * -> * # Methods from :: OperationSchema -> Rep OperationSchema x # to :: Rep OperationSchema x -> OperationSchema #
ToJSON OperationSchema #
Methods toJSON :: OperationSchema -> Value # toEncoding :: OperationSchema -> Encoding # toJSONList :: [OperationSchema] -> Value # toEncodingList :: [OperationSchema] -> Encoding #
FromJSON OperationSchema #
Methods parseJSON :: Value -> Parser OperationSchema # parseJSONList :: Value -> Parser [OperationSchema] #
type Rep OperationSchema #
type Rep OperationSchema = D1 (MetaData "OperationSchema" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "OperationSchema'" PrefixI True) (S1 (MetaSel (Just Symbol "_osAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationSchema #

Arguments

:: HashMap Text JSONValue	`osAddtional`
-> OperationSchema

Creates a value of OperationSchema with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

osAddtional

osAddtional :: Lens' OperationSchema (HashMap Text JSONValue) #

Properties of the object. Contains field 'type with type URL.

VariantAnnotationEffect

data VariantAnnotationEffect #

Effect of the variant on the coding sequence.

Constructors

EffectUnspecified	EFFECT_UNSPECIFIED
EffectOther	`EFFECT_OTHER` `EFFECT_OTHER` should be used when no other Effect will suffice.
Frameshift	`FRAMESHIFT` `FRAMESHIFT` indicates a mutation in which the insertion or deletion of nucleotides resulted in a frameshift change.
FramePreservingIndel	`FRAME_PRESERVING_INDEL` `FRAME_PRESERVING_INDEL` indicates a mutation in which a multiple of three nucleotides has been inserted or deleted, resulting in no change to the reading frame of the coding sequence.
SynonymousSnp	`SYNONYMOUS_SNP` `SYNONYMOUS_SNP` indicates a single nucleotide polymorphism mutation that results in no amino acid change.
NonsynonymousSnp	`NONSYNONYMOUS_SNP` `NONSYNONYMOUS_SNP` indicates a single nucleotide polymorphism mutation that results in an amino acid change.
StopGain	`STOP_GAIN` `STOP_GAIN` indicates a mutation that leads to the creation of a stop codon at the variant site. Frameshift mutations creating downstream stop codons do not count as `STOP_GAIN`.
StopLoss	`STOP_LOSS` `STOP_LOSS` indicates a mutation that eliminates a stop codon at the variant site.
SpliceSiteDisruption	`SPLICE_SITE_DISRUPTION` `SPLICE_SITE_DISRUPTION` indicates that this variant is found in a splice site for the associated transcript, and alters the normal splicing pattern.

Instances

Enum VariantAnnotationEffect #
Methods succ :: VariantAnnotationEffect -> VariantAnnotationEffect # pred :: VariantAnnotationEffect -> VariantAnnotationEffect # toEnum :: Int -> VariantAnnotationEffect # fromEnum :: VariantAnnotationEffect -> Int # enumFrom :: VariantAnnotationEffect -> [VariantAnnotationEffect] # enumFromThen :: VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect] # enumFromTo :: VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect] # enumFromThenTo :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect -> [VariantAnnotationEffect] #
Eq VariantAnnotationEffect #
Methods (==) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool # (/=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool #
Data VariantAnnotationEffect #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationEffect -> c VariantAnnotationEffect # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationEffect # toConstr :: VariantAnnotationEffect -> Constr # dataTypeOf :: VariantAnnotationEffect -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationEffect) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationEffect) # gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationEffect -> VariantAnnotationEffect # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationEffect -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationEffect -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationEffect -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationEffect -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationEffect -> m VariantAnnotationEffect #
Ord VariantAnnotationEffect #
Methods compare :: VariantAnnotationEffect -> VariantAnnotationEffect -> Ordering # (<) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool # (<=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool # (>) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool # (>=) :: VariantAnnotationEffect -> VariantAnnotationEffect -> Bool # max :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect # min :: VariantAnnotationEffect -> VariantAnnotationEffect -> VariantAnnotationEffect #
Read VariantAnnotationEffect #
Methods readsPrec :: Int -> ReadS VariantAnnotationEffect # readList :: ReadS [VariantAnnotationEffect] # readPrec :: ReadPrec VariantAnnotationEffect # readListPrec :: ReadPrec [VariantAnnotationEffect] #
Show VariantAnnotationEffect #
Methods showsPrec :: Int -> VariantAnnotationEffect -> ShowS # show :: VariantAnnotationEffect -> String # showList :: [VariantAnnotationEffect] -> ShowS #
Generic VariantAnnotationEffect #
Associated Types type Rep VariantAnnotationEffect :: * -> * # Methods from :: VariantAnnotationEffect -> Rep VariantAnnotationEffect x # to :: Rep VariantAnnotationEffect x -> VariantAnnotationEffect #
Hashable VariantAnnotationEffect #
Methods hashWithSalt :: Int -> VariantAnnotationEffect -> Int # hash :: VariantAnnotationEffect -> Int #
ToJSON VariantAnnotationEffect #
Methods toJSON :: VariantAnnotationEffect -> Value # toEncoding :: VariantAnnotationEffect -> Encoding # toJSONList :: [VariantAnnotationEffect] -> Value # toEncodingList :: [VariantAnnotationEffect] -> Encoding #
FromJSON VariantAnnotationEffect #
Methods parseJSON :: Value -> Parser VariantAnnotationEffect # parseJSONList :: Value -> Parser [VariantAnnotationEffect] #
FromHttpApiData VariantAnnotationEffect #
Methods parseUrlPiece :: Text -> Either Text VariantAnnotationEffect # parseHeader :: ByteString -> Either Text VariantAnnotationEffect # parseQueryParam :: Text -> Either Text VariantAnnotationEffect #
ToHttpApiData VariantAnnotationEffect #
Methods toUrlPiece :: VariantAnnotationEffect -> Text # toEncodedUrlPiece :: VariantAnnotationEffect -> Builder # toHeader :: VariantAnnotationEffect -> ByteString # toQueryParam :: VariantAnnotationEffect -> Text #
type Rep VariantAnnotationEffect #
type Rep VariantAnnotationEffect = D1 (MetaData "VariantAnnotationEffect" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "EffectUnspecified" PrefixI False) U1) (C1 (MetaCons "EffectOther" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Frameshift" PrefixI False) U1) (C1 (MetaCons "FramePreservingIndel" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "SynonymousSnp" PrefixI False) U1) (C1 (MetaCons "NonsynonymousSnp" PrefixI False) U1)) ((:+:) (C1 (MetaCons "StopGain" PrefixI False) U1) ((:+:) (C1 (MetaCons "StopLoss" PrefixI False) U1) (C1 (MetaCons "SpliceSiteDisruption" PrefixI False) U1)))))

Variant

data Variant #

A variant represents a change in DNA sequence relative to a reference sequence. For example, a variant could represent a SNP or an insertion. Variants belong to a variant set. For more genomics resource definitions, see Fundamentals of Google Genomics Each of the calls on a variant represent a determination of genotype with respect to that variant. For example, a call might assign probability of 0.32 to the occurrence of a SNP named rs1234 in a sample named NA12345. A call belongs to a call set, which contains related calls typically from one sample.

See: variant smart constructor.

Instances

Eq Variant #
Methods (==) :: Variant -> Variant -> Bool # (/=) :: Variant -> Variant -> Bool #
Data Variant #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Variant -> c Variant # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Variant # toConstr :: Variant -> Constr # dataTypeOf :: Variant -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Variant) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Variant) # gmapT :: (forall b. Data b => b -> b) -> Variant -> Variant # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Variant -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Variant -> r # gmapQ :: (forall d. Data d => d -> u) -> Variant -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Variant -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Variant -> m Variant # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Variant -> m Variant # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Variant -> m Variant #
Show Variant #
Methods showsPrec :: Int -> Variant -> ShowS # show :: Variant -> String # showList :: [Variant] -> ShowS #
Generic Variant #
Associated Types type Rep Variant :: * -> * # Methods from :: Variant -> Rep Variant x # to :: Rep Variant x -> Variant #
ToJSON Variant #
Methods toJSON :: Variant -> Value # toEncoding :: Variant -> Encoding # toJSONList :: [Variant] -> Value # toEncodingList :: [Variant] -> Encoding #
FromJSON Variant #
Methods parseJSON :: Value -> Parser Variant # parseJSONList :: Value -> Parser [Variant] #
type Rep Variant #
type Rep Variant = D1 (MetaData "Variant" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Variant'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_vVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_vCreated") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_vStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((::) (S1 (MetaSel (Just Symbol "_vAlternateBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((::) (S1 (MetaSel (Just Symbol "_vReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_vEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_vReferenceBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_vQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Double)))) (S1 (MetaSel (Just Symbol "_vFilter") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((::) (S1 (MetaSel (Just Symbol "_vInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantInfo))) (S1 (MetaSel (Just Symbol "_vCalls") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantCall]))))))))

variant :: Variant #

Creates a value of Variant with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vVariantSetId :: Lens' Variant (Maybe Text) #

The ID of the variant set this variant belongs to.

vCreated :: Lens' Variant (Maybe Int64) #

The date this variant was created, in milliseconds from the epoch.

vStart :: Lens' Variant (Maybe Int64) #

The position at which this variant occurs (0-based). This corresponds to the first base of the string of reference bases.

vAlternateBases :: Lens' Variant [Text] #

The bases that appear instead of the reference bases.

vReferenceName :: Lens' Variant (Maybe Text) #

The reference on which this variant occurs. (such as `chr20` or `X`)

vNames :: Lens' Variant [Text] #

Names for the variant, for example a RefSNP ID.

vEnd :: Lens' Variant (Maybe Int64) #

The end position (0-based) of this variant. This corresponds to the first base after the last base in the reference allele. So, the length of the reference allele is (end - start). This is useful for variants that don't explicitly give alternate bases, for example large deletions.

vReferenceBases :: Lens' Variant (Maybe Text) #

The reference bases for this variant. They start at the given position.

vId :: Lens' Variant (Maybe Text) #

The server-generated variant ID, unique across all variants.

vQuality :: Lens' Variant (Maybe Double) #

A measure of how likely this variant is to be real. A higher value is better.

vFilter :: Lens' Variant [Text] #

A list of filters (normally quality filters) this variant has failed. `PASS` indicates this variant has passed all filters.

vInfo :: Lens' Variant (Maybe VariantInfo) #

A map of additional variant information. This must be of the form map (string key mapping to a list of string values).

vCalls :: Lens' Variant [VariantCall] #

The variant calls for this particular variant. Each one represents the determination of genotype with respect to this variant.

Annotation

data Annotation #

An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are `GENE` and `VARIANT`.

See: annotation smart constructor.

Instances

Eq Annotation #
Methods (==) :: Annotation -> Annotation -> Bool # (/=) :: Annotation -> Annotation -> Bool #
Data Annotation #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Annotation -> c Annotation # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Annotation # toConstr :: Annotation -> Constr # dataTypeOf :: Annotation -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Annotation) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Annotation) # gmapT :: (forall b. Data b => b -> b) -> Annotation -> Annotation # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Annotation -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Annotation -> r # gmapQ :: (forall d. Data d => d -> u) -> Annotation -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Annotation -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Annotation -> m Annotation #
Show Annotation #
Methods showsPrec :: Int -> Annotation -> ShowS # show :: Annotation -> String # showList :: [Annotation] -> ShowS #
Generic Annotation #
Associated Types type Rep Annotation :: * -> * # Methods from :: Annotation -> Rep Annotation x # to :: Rep Annotation x -> Annotation #
ToJSON Annotation #
Methods toJSON :: Annotation -> Value # toEncoding :: Annotation -> Encoding # toJSONList :: [Annotation] -> Value # toEncodingList :: [Annotation] -> Encoding #
FromJSON Annotation #
Methods parseJSON :: Value -> Parser Annotation # parseJSONList :: Value -> Parser [Annotation] #
type Rep Annotation #
type Rep Annotation = D1 (MetaData "Annotation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Annotation'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_aVariant") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotation))) ((::) (S1 (MetaSel (Just Symbol "_aAnnotationSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_aStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((::) (S1 (MetaSel (Just Symbol "_aReverseStrand") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) ((::) (S1 (MetaSel (Just Symbol "_aReferenceId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_aReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_aName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_aEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_aId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) (S1 (MetaSel (Just Symbol "_aType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationType))) ((:*:) (S1 (MetaSel (Just Symbol "_aTranscript") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Transcript))) (S1 (MetaSel (Just Symbol "_aInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationInfo))))))))

annotation :: Annotation #

Creates a value of Annotation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

aVariant :: Lens' Annotation (Maybe VariantAnnotation) #

A variant annotation, which describes the effect of a variant on the genome, the coding sequence, and/or higher level consequences at the organism level e.g. pathogenicity. This field is only set for annotations of type `VARIANT`.

aAnnotationSetId :: Lens' Annotation (Maybe Text) #

The annotation set to which this annotation belongs.

aStart :: Lens' Annotation (Maybe Int64) #

The start position of the range on the reference, 0-based inclusive.

aReverseStrand :: Lens' Annotation (Maybe Bool) #

Whether this range refers to the reverse strand, as opposed to the forward strand. Note that regardless of this field, the start/end position of the range always refer to the forward strand.

aReferenceId :: Lens' Annotation (Maybe Text) #

The ID of the Google Genomics reference associated with this range.

aReferenceName :: Lens' Annotation (Maybe Text) #

The display name corresponding to the reference specified by `referenceId`, for example `chr1`, `1`, or `chrX`.

aName :: Lens' Annotation (Maybe Text) #

The display name of this annotation.

aEnd :: Lens' Annotation (Maybe Int64) #

The end position of the range on the reference, 0-based exclusive.

aId :: Lens' Annotation (Maybe Text) #

The server-generated annotation ID, unique across all annotations.

aType :: Lens' Annotation (Maybe AnnotationType) #

The data type for this annotation. Must match the containing annotation set's type.

aTranscript :: Lens' Annotation (Maybe Transcript) #

A transcript value represents the assertion that a particular region of the reference genome may be transcribed as RNA. An alternative splicing pattern would be represented as a separate transcript object. This field is only set for annotations of type `TRANSCRIPT`.

aInfo :: Lens' Annotation (Maybe AnnotationInfo) #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

ListBasesResponse

data ListBasesResponse #

Instances

Eq ListBasesResponse #
Methods (==) :: ListBasesResponse -> ListBasesResponse -> Bool # (/=) :: ListBasesResponse -> ListBasesResponse -> Bool #
Data ListBasesResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListBasesResponse -> c ListBasesResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListBasesResponse # toConstr :: ListBasesResponse -> Constr # dataTypeOf :: ListBasesResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ListBasesResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListBasesResponse) # gmapT :: (forall b. Data b => b -> b) -> ListBasesResponse -> ListBasesResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListBasesResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListBasesResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ListBasesResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ListBasesResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListBasesResponse -> m ListBasesResponse #
Show ListBasesResponse #
Methods showsPrec :: Int -> ListBasesResponse -> ShowS # show :: ListBasesResponse -> String # showList :: [ListBasesResponse] -> ShowS #
Generic ListBasesResponse #
Associated Types type Rep ListBasesResponse :: * -> * # Methods from :: ListBasesResponse -> Rep ListBasesResponse x # to :: Rep ListBasesResponse x -> ListBasesResponse #
ToJSON ListBasesResponse #
Methods toJSON :: ListBasesResponse -> Value # toEncoding :: ListBasesResponse -> Encoding # toJSONList :: [ListBasesResponse] -> Value # toEncodingList :: [ListBasesResponse] -> Encoding #
FromJSON ListBasesResponse #
Methods parseJSON :: Value -> Parser ListBasesResponse # parseJSONList :: Value -> Parser [ListBasesResponse] #
type Rep ListBasesResponse #
type Rep ListBasesResponse = D1 (MetaData "ListBasesResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ListBasesResponse'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_lbrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_lbrOffSet") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_lbrSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

listBasesResponse :: ListBasesResponse #

Creates a value of ListBasesResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

lbrNextPageToken :: Lens' ListBasesResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

lbrOffSet :: Lens' ListBasesResponse (Maybe Int64) #

The offset position (0-based) of the given `sequence` from the start of this `Reference`. This value will differ for each page in a paginated request.

lbrSequence :: Lens' ListBasesResponse (Maybe Text) #

A substring of the bases that make up this reference.

ListOperationsResponse

data ListOperationsResponse #

The response message for Operations.ListOperations.

See: listOperationsResponse smart constructor.

Instances

Eq ListOperationsResponse #
Methods (==) :: ListOperationsResponse -> ListOperationsResponse -> Bool # (/=) :: ListOperationsResponse -> ListOperationsResponse -> Bool #
Data ListOperationsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListOperationsResponse -> c ListOperationsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListOperationsResponse # toConstr :: ListOperationsResponse -> Constr # dataTypeOf :: ListOperationsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ListOperationsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListOperationsResponse) # gmapT :: (forall b. Data b => b -> b) -> ListOperationsResponse -> ListOperationsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListOperationsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListOperationsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ListOperationsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ListOperationsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListOperationsResponse -> m ListOperationsResponse #
Show ListOperationsResponse #
Methods showsPrec :: Int -> ListOperationsResponse -> ShowS # show :: ListOperationsResponse -> String # showList :: [ListOperationsResponse] -> ShowS #
Generic ListOperationsResponse #
Associated Types type Rep ListOperationsResponse :: * -> * # Methods from :: ListOperationsResponse -> Rep ListOperationsResponse x # to :: Rep ListOperationsResponse x -> ListOperationsResponse #
ToJSON ListOperationsResponse #
Methods toJSON :: ListOperationsResponse -> Value # toEncoding :: ListOperationsResponse -> Encoding # toJSONList :: [ListOperationsResponse] -> Value # toEncodingList :: [ListOperationsResponse] -> Encoding #
FromJSON ListOperationsResponse #
Methods parseJSON :: Value -> Parser ListOperationsResponse # parseJSONList :: Value -> Parser [ListOperationsResponse] #
type Rep ListOperationsResponse #
type Rep ListOperationsResponse = D1 (MetaData "ListOperationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ListOperationsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_lorNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_lorOperations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Operation])))))

listOperationsResponse :: ListOperationsResponse #

Creates a value of ListOperationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

lorNextPageToken :: Lens' ListOperationsResponse (Maybe Text) #

The standard List next-page token.

lorOperations :: Lens' ListOperationsResponse [Operation] #

A list of operations that matches the specified filter in the request.

GetIAMPolicyRequest

data GetIAMPolicyRequest #

Request message for `GetIamPolicy` method.

See: getIAMPolicyRequest smart constructor.

Instances

Eq GetIAMPolicyRequest #
Methods (==) :: GetIAMPolicyRequest -> GetIAMPolicyRequest -> Bool # (/=) :: GetIAMPolicyRequest -> GetIAMPolicyRequest -> Bool #
Data GetIAMPolicyRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> GetIAMPolicyRequest -> c GetIAMPolicyRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c GetIAMPolicyRequest # toConstr :: GetIAMPolicyRequest -> Constr # dataTypeOf :: GetIAMPolicyRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c GetIAMPolicyRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c GetIAMPolicyRequest) # gmapT :: (forall b. Data b => b -> b) -> GetIAMPolicyRequest -> GetIAMPolicyRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> GetIAMPolicyRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> GetIAMPolicyRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> GetIAMPolicyRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> GetIAMPolicyRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> GetIAMPolicyRequest -> m GetIAMPolicyRequest #
Show GetIAMPolicyRequest #
Methods showsPrec :: Int -> GetIAMPolicyRequest -> ShowS # show :: GetIAMPolicyRequest -> String # showList :: [GetIAMPolicyRequest] -> ShowS #
Generic GetIAMPolicyRequest #
Associated Types type Rep GetIAMPolicyRequest :: * -> * # Methods from :: GetIAMPolicyRequest -> Rep GetIAMPolicyRequest x # to :: Rep GetIAMPolicyRequest x -> GetIAMPolicyRequest #
ToJSON GetIAMPolicyRequest #
Methods toJSON :: GetIAMPolicyRequest -> Value # toEncoding :: GetIAMPolicyRequest -> Encoding # toJSONList :: [GetIAMPolicyRequest] -> Value # toEncodingList :: [GetIAMPolicyRequest] -> Encoding #
FromJSON GetIAMPolicyRequest #
Methods parseJSON :: Value -> Parser GetIAMPolicyRequest # parseJSONList :: Value -> Parser [GetIAMPolicyRequest] #
type Rep GetIAMPolicyRequest #
type Rep GetIAMPolicyRequest = D1 (MetaData "GetIAMPolicyRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "GetIAMPolicyRequest'" PrefixI False) U1)

getIAMPolicyRequest :: GetIAMPolicyRequest #

Creates a value of GetIAMPolicyRequest with the minimum fields required to make a request.

CancelOperationRequest

data CancelOperationRequest #

The request message for Operations.CancelOperation.

See: cancelOperationRequest smart constructor.

Instances

Eq CancelOperationRequest #
Methods (==) :: CancelOperationRequest -> CancelOperationRequest -> Bool # (/=) :: CancelOperationRequest -> CancelOperationRequest -> Bool #
Data CancelOperationRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CancelOperationRequest -> c CancelOperationRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CancelOperationRequest # toConstr :: CancelOperationRequest -> Constr # dataTypeOf :: CancelOperationRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CancelOperationRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CancelOperationRequest) # gmapT :: (forall b. Data b => b -> b) -> CancelOperationRequest -> CancelOperationRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CancelOperationRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CancelOperationRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> CancelOperationRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CancelOperationRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CancelOperationRequest -> m CancelOperationRequest #
Show CancelOperationRequest #
Methods showsPrec :: Int -> CancelOperationRequest -> ShowS # show :: CancelOperationRequest -> String # showList :: [CancelOperationRequest] -> ShowS #
Generic CancelOperationRequest #
Associated Types type Rep CancelOperationRequest :: * -> * # Methods from :: CancelOperationRequest -> Rep CancelOperationRequest x # to :: Rep CancelOperationRequest x -> CancelOperationRequest #
ToJSON CancelOperationRequest #
Methods toJSON :: CancelOperationRequest -> Value # toEncoding :: CancelOperationRequest -> Encoding # toJSONList :: [CancelOperationRequest] -> Value # toEncodingList :: [CancelOperationRequest] -> Encoding #
FromJSON CancelOperationRequest #
Methods parseJSON :: Value -> Parser CancelOperationRequest # parseJSONList :: Value -> Parser [CancelOperationRequest] #
type Rep CancelOperationRequest #
type Rep CancelOperationRequest = D1 (MetaData "CancelOperationRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "CancelOperationRequest'" PrefixI False) U1)

cancelOperationRequest :: CancelOperationRequest #

Creates a value of CancelOperationRequest with the minimum fields required to make a request.

DataSet

data DataSet #

A Dataset is a collection of genomic data. For more genomics resource definitions, see Fundamentals of Google Genomics

See: dataSet smart constructor.

Instances

Eq DataSet #
Methods (==) :: DataSet -> DataSet -> Bool # (/=) :: DataSet -> DataSet -> Bool #
Data DataSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> DataSet -> c DataSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c DataSet # toConstr :: DataSet -> Constr # dataTypeOf :: DataSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c DataSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c DataSet) # gmapT :: (forall b. Data b => b -> b) -> DataSet -> DataSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> DataSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> DataSet -> r # gmapQ :: (forall d. Data d => d -> u) -> DataSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> DataSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> DataSet -> m DataSet #
Show DataSet #
Methods showsPrec :: Int -> DataSet -> ShowS # show :: DataSet -> String # showList :: [DataSet] -> ShowS #
Generic DataSet #
Associated Types type Rep DataSet :: * -> * # Methods from :: DataSet -> Rep DataSet x # to :: Rep DataSet x -> DataSet #
ToJSON DataSet #
Methods toJSON :: DataSet -> Value # toEncoding :: DataSet -> Encoding # toJSONList :: [DataSet] -> Value # toEncodingList :: [DataSet] -> Encoding #
FromJSON DataSet #
Methods parseJSON :: Value -> Parser DataSet # parseJSONList :: Value -> Parser [DataSet] #
type Rep DataSet #
type Rep DataSet = D1 (MetaData "DataSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "DataSet'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_dsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_dsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_dsProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_dsCreateTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))))))

dataSet :: DataSet #

Creates a value of DataSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

dsName :: Lens' DataSet (Maybe Text) #

The dataset name.

dsId :: Lens' DataSet (Maybe Text) #

The server-generated dataset ID, unique across all datasets.

dsProjectId :: Lens' DataSet (Maybe Text) #

The Google Cloud project ID that this dataset belongs to.

dsCreateTime :: Lens' DataSet (Maybe UTCTime) #

The time this dataset was created, in seconds from the epoch.

Read'

data Read' #

A read alignment describes a linear alignment of a string of DNA to a reference sequence, in addition to metadata about the fragment (the molecule of DNA sequenced) and the read (the bases which were read by the sequencer). A read is equivalent to a line in a SAM file. A read belongs to exactly one read group and exactly one read group set. For more genomics resource definitions, see Fundamentals of Google Genomics ### Reverse-stranded reads Mapped reads (reads having a non-null `alignment`) can be aligned to either the forward or the reverse strand of their associated reference. Strandedness of a mapped read is encoded by `alignment.position.reverseStrand`. If we consider the reference to be a forward-stranded coordinate space of `[0, reference.length)` with `0` as the left-most position and `reference.length` as the right-most position, reads are always aligned left to right. That is, `alignment.position.position` always refers to the left-most reference coordinate and `alignment.cigar` describes the alignment of this read to the reference from left to right. All per-base fields such as `alignedSequence` and `alignedQuality` share this same left-to-right orientation; this is true of reads which are aligned to either strand. For reverse-stranded reads, this means that `alignedSequence` is the reverse complement of the bases that were originally reported by the sequencing machine. ### Generating a reference-aligned sequence string When interacting with mapped reads, it's often useful to produce a string representing the local alignment of the read to reference. The following pseudocode demonstrates one way of doing this: out = "" offset = 0 for c in read.alignment.cigar { switch c.operation { case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH": out += read.alignedSequence[offset:offset+c.operationLength] offset += c.operationLength break case "CLIP_SOFT", "INSERT": offset += c.operationLength break case "PAD": out += repeat("*", c.operationLength) break case "DELETE": out += repeat("-", c.operationLength) break case "SKIP": out += repeat(" ", c.operationLength) break case "CLIP_HARD": break } } return out ### Converting to SAM's CIGAR string The following pseudocode generates a SAM CIGAR string from the `cigar` field. Note that this is a lossy conversion (`cigar.referenceSequence` is lost). cigarMap = { "ALIGNMENT_MATCH": "M", "INSERT": "I", "DELETE": "D", "SKIP": "N", "CLIP_SOFT": "S", "CLIP_HARD": "H", "PAD": "P", "SEQUENCE_MATCH": "=", "SEQUENCE_MISMATCH": "X", } cigarStr = "" for c in read.alignment.cigar { cigarStr += c.operationLength + cigarMap[c.operation] } return cigarStr

See: read' smart constructor.

Instances

Eq Read' #
Methods (==) :: Read' -> Read' -> Bool # (/=) :: Read' -> Read' -> Bool #
Data Read' #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Read' -> c Read' # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Read' # toConstr :: Read' -> Constr # dataTypeOf :: Read' -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Read') # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Read') # gmapT :: (forall b. Data b => b -> b) -> Read' -> Read' # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Read' -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Read' -> r # gmapQ :: (forall d. Data d => d -> u) -> Read' -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Read' -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Read' -> m Read' # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Read' -> m Read' # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Read' -> m Read' #
Show Read' #
Methods showsPrec :: Int -> Read' -> ShowS # show :: Read' -> String # showList :: [Read'] -> ShowS #
Generic Read' #
Associated Types type Rep Read' :: * -> * # Methods from :: Read' -> Rep Read' x # to :: Rep Read' x -> Read' #
ToJSON Read' #
Methods toJSON :: Read' -> Value # toEncoding :: Read' -> Encoding # toJSONList :: [Read'] -> Value # toEncodingList :: [Read'] -> Encoding #
FromJSON Read' #
Methods parseJSON :: Value -> Parser Read' # parseJSONList :: Value -> Parser [Read'] #
type Rep Read' #
type Rep Read' = D1 (MetaData "Read'" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Read''" PrefixI True) ((::) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_rFragmentLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_rDuplicateFragment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((::) (S1 (MetaSel (Just Symbol "_rReadGroupSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rNextMatePosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Position))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_rFailedVendorQualityChecks") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_rAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe LinearAlignment)))) ((::) (S1 (MetaSel (Just Symbol "_rFragmentName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rNumberReads") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_rId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rSecondaryAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((::) (S1 (MetaSel (Just Symbol "_rReadGroupId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rSupplementaryAlignment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_rAlignedSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rProperPlacement") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool)))) ((::) (S1 (MetaSel (Just Symbol "_rInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadInfo))) ((::) (S1 (MetaSel (Just Symbol "_rReadNumber") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_rAlignedQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Int32])))))))))

read' :: Read' #

Creates a value of Read with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rFragmentLength :: Lens' Read' (Maybe Int32) #

The observed length of the fragment, equivalent to TLEN in SAM.

rDuplicateFragment :: Lens' Read' (Maybe Bool) #

The fragment is a PCR or optical duplicate (SAM flag 0x400).

rReadGroupSetId :: Lens' Read' (Maybe Text) #

The ID of the read group set this read belongs to. A read belongs to exactly one read group set.

rNextMatePosition :: Lens' Read' (Maybe Position) #

The mapping of the primary alignment of the `(readNumber+1)%numberReads` read in the fragment. It replaces mate position and mate strand in SAM.

rFailedVendorQualityChecks :: Lens' Read' (Maybe Bool) #

Whether this read did not pass filters, such as platform or vendor quality controls (SAM flag 0x200).

rAlignment :: Lens' Read' (Maybe LinearAlignment) #

The linear alignment for this alignment record. This field is null for unmapped reads.

rFragmentName :: Lens' Read' (Maybe Text) #

The fragment name. Equivalent to QNAME (query template name) in SAM.

rNumberReads :: Lens' Read' (Maybe Int32) #

The number of reads in the fragment (extension to SAM flag 0x1).

rId :: Lens' Read' (Maybe Text) #

The server-generated read ID, unique across all reads. This is different from the `fragmentName`.

rSecondaryAlignment :: Lens' Read' (Maybe Bool) #

Whether this alignment is secondary. Equivalent to SAM flag 0x100. A secondary alignment represents an alternative to the primary alignment for this read. Aligners may return secondary alignments if a read can map ambiguously to multiple coordinates in the genome. By convention, each read has one and only one alignment where both `secondaryAlignment` and `supplementaryAlignment` are false.

rReadGroupId :: Lens' Read' (Maybe Text) #

The ID of the read group this read belongs to. A read belongs to exactly one read group. This is a server-generated ID which is distinct from SAM's RG tag (for that value, see ReadGroup.name).

rSupplementaryAlignment :: Lens' Read' (Maybe Bool) #

Whether this alignment is supplementary. Equivalent to SAM flag 0x800. Supplementary alignments are used in the representation of a chimeric alignment. In a chimeric alignment, a read is split into multiple linear alignments that map to different reference contigs. The first linear alignment in the read will be designated as the representative alignment; the remaining linear alignments will be designated as supplementary alignments. These alignments may have different mapping quality scores. In each linear alignment in a chimeric alignment, the read will be hard clipped. The `alignedSequence` and `alignedQuality` fields in the alignment record will only represent the bases for its respective linear alignment.

rAlignedSequence :: Lens' Read' (Maybe Text) #

The bases of the read sequence contained in this alignment record, **without CIGAR operations applied** (equivalent to SEQ in SAM). `alignedSequence` and `alignedQuality` may be shorter than the full read sequence and quality. This will occur if the alignment is part of a chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR for this read will begin/end with a hard clip operator that will indicate the length of the excised sequence.

rProperPlacement :: Lens' Read' (Maybe Bool) #

The orientation and the distance between reads from the fragment are consistent with the sequencing protocol (SAM flag 0x2).

rInfo :: Lens' Read' (Maybe ReadInfo) #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

rReadNumber :: Lens' Read' (Maybe Int32) #

The read number in sequencing. 0-based and less than numberReads. This field replaces SAM flag 0x40 and 0x80.

rAlignedQuality :: Lens' Read' [Int32] #

The quality of the read sequence contained in this alignment record (equivalent to QUAL in SAM). `alignedSequence` and `alignedQuality` may be shorter than the full read sequence and quality. This will occur if the alignment is part of a chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR for this read will begin/end with a hard clip operator that will indicate the length of the excised sequence.

OperationMetadataLabels

data OperationMetadataLabels #

Optionally provided by the caller when submitting the request that creates the operation.

See: operationMetadataLabels smart constructor.

Instances

Eq OperationMetadataLabels #
Methods (==) :: OperationMetadataLabels -> OperationMetadataLabels -> Bool # (/=) :: OperationMetadataLabels -> OperationMetadataLabels -> Bool #
Data OperationMetadataLabels #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataLabels -> c OperationMetadataLabels # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataLabels # toConstr :: OperationMetadataLabels -> Constr # dataTypeOf :: OperationMetadataLabels -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataLabels) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataLabels) # gmapT :: (forall b. Data b => b -> b) -> OperationMetadataLabels -> OperationMetadataLabels # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataLabels -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataLabels -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataLabels -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataLabels -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataLabels -> m OperationMetadataLabels #
Show OperationMetadataLabels #
Methods showsPrec :: Int -> OperationMetadataLabels -> ShowS # show :: OperationMetadataLabels -> String # showList :: [OperationMetadataLabels] -> ShowS #
Generic OperationMetadataLabels #
Associated Types type Rep OperationMetadataLabels :: * -> * # Methods from :: OperationMetadataLabels -> Rep OperationMetadataLabels x # to :: Rep OperationMetadataLabels x -> OperationMetadataLabels #
ToJSON OperationMetadataLabels #
Methods toJSON :: OperationMetadataLabels -> Value # toEncoding :: OperationMetadataLabels -> Encoding # toJSONList :: [OperationMetadataLabels] -> Value # toEncodingList :: [OperationMetadataLabels] -> Encoding #
FromJSON OperationMetadataLabels #
Methods parseJSON :: Value -> Parser OperationMetadataLabels # parseJSONList :: Value -> Parser [OperationMetadataLabels] #
type Rep OperationMetadataLabels #
type Rep OperationMetadataLabels = D1 (MetaData "OperationMetadataLabels" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "OperationMetadataLabels'" PrefixI True) (S1 (MetaSel (Just Symbol "_omlAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

operationMetadataLabels #

Arguments

:: HashMap Text Text	`omlAddtional`
-> OperationMetadataLabels

Creates a value of OperationMetadataLabels with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

omlAddtional

omlAddtional :: Lens' OperationMetadataLabels (HashMap Text Text) #

VariantCall

data VariantCall #

A call represents the determination of genotype with respect to a particular variant. It may include associated information such as quality and phasing. For example, a call might assign a probability of 0.32 to the occurrence of a SNP named rs1234 in a call set with the name NA12345.

See: variantCall smart constructor.

Instances

Eq VariantCall #
Methods (==) :: VariantCall -> VariantCall -> Bool # (/=) :: VariantCall -> VariantCall -> Bool #
Data VariantCall #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantCall -> c VariantCall # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantCall # toConstr :: VariantCall -> Constr # dataTypeOf :: VariantCall -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantCall) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantCall) # gmapT :: (forall b. Data b => b -> b) -> VariantCall -> VariantCall # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantCall -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantCall -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantCall -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantCall -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCall -> m VariantCall #
Show VariantCall #
Methods showsPrec :: Int -> VariantCall -> ShowS # show :: VariantCall -> String # showList :: [VariantCall] -> ShowS #
Generic VariantCall #
Associated Types type Rep VariantCall :: * -> * # Methods from :: VariantCall -> Rep VariantCall x # to :: Rep VariantCall x -> VariantCall #
ToJSON VariantCall #
Methods toJSON :: VariantCall -> Value # toEncoding :: VariantCall -> Encoding # toJSONList :: [VariantCall] -> Value # toEncodingList :: [VariantCall] -> Encoding #
FromJSON VariantCall #
Methods parseJSON :: Value -> Parser VariantCall # parseJSONList :: Value -> Parser [VariantCall] #
type Rep VariantCall #
type Rep VariantCall = D1 (MetaData "VariantCall" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "VariantCall'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_vcGenotypeLikelihood") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Double]))) ((::) (S1 (MetaSel (Just Symbol "_vcCallSetName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vcPhaseset") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) (S1 (MetaSel (Just Symbol "_vcCallSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_vcGenotype") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Textual Int32]))) (S1 (MetaSel (Just Symbol "_vcInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantCallInfo)))))))

variantCall :: VariantCall #

Creates a value of VariantCall with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vcGenotypeLikelihood :: Lens' VariantCall [Double] #

The genotype likelihoods for this variant call. Each array entry represents how likely a specific genotype is for this call. The value ordering is defined by the GL tag in the VCF spec. If Phred-scaled genotype likelihood scores (PL) are available and log10(P) genotype likelihood scores (GL) are not, PL scores are converted to GL scores. If both are available, PL scores are stored in `info`.

vcCallSetName :: Lens' VariantCall (Maybe Text) #

The name of the call set this variant call belongs to.

vcPhaseset :: Lens' VariantCall (Maybe Text) #

If this field is present, this variant call's genotype ordering implies the phase of the bases and is consistent with any other variant calls in the same reference sequence which have the same phaseset value. When importing data from VCF, if the genotype data was phased but no phase set was specified this field will be set to `*`.

vcCallSetId :: Lens' VariantCall (Maybe Text) #

The ID of the call set this variant call belongs to.

vcGenotype :: Lens' VariantCall [Int32] #

The genotype of this variant call. Each value represents either the value of the `referenceBases` field or a 1-based index into `alternateBases`. If a variant had a `referenceBases` value of `T` and an `alternateBases` value of `["A", "C"]`, and the `genotype` was `[2, 1]`, that would mean the call represented the heterozygous value `CA` for this variant. If the `genotype` was instead `[0, 1]`, the represented value would be `TA`. Ordering of the genotype values is important if the `phaseset` is present. If a genotype is not called (that is, a `.` is present in the GT string) -1 is returned.

vcInfo :: Lens' VariantCall (Maybe VariantCallInfo) #

A map of additional variant call information. This must be of the form map (string key mapping to a list of string values).

BatchCreateAnnotationsRequest

data BatchCreateAnnotationsRequest #

Instances

Eq BatchCreateAnnotationsRequest #
Methods (==) :: BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest -> Bool # (/=) :: BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest -> Bool #
Data BatchCreateAnnotationsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BatchCreateAnnotationsRequest -> c BatchCreateAnnotationsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BatchCreateAnnotationsRequest # toConstr :: BatchCreateAnnotationsRequest -> Constr # dataTypeOf :: BatchCreateAnnotationsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c BatchCreateAnnotationsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BatchCreateAnnotationsRequest) # gmapT :: (forall b. Data b => b -> b) -> BatchCreateAnnotationsRequest -> BatchCreateAnnotationsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> BatchCreateAnnotationsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> BatchCreateAnnotationsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsRequest -> m BatchCreateAnnotationsRequest #
Show BatchCreateAnnotationsRequest #
Methods showsPrec :: Int -> BatchCreateAnnotationsRequest -> ShowS # show :: BatchCreateAnnotationsRequest -> String # showList :: [BatchCreateAnnotationsRequest] -> ShowS #
Generic BatchCreateAnnotationsRequest #
Associated Types type Rep BatchCreateAnnotationsRequest :: * -> * # Methods from :: BatchCreateAnnotationsRequest -> Rep BatchCreateAnnotationsRequest x # to :: Rep BatchCreateAnnotationsRequest x -> BatchCreateAnnotationsRequest #
ToJSON BatchCreateAnnotationsRequest #
Methods toJSON :: BatchCreateAnnotationsRequest -> Value # toEncoding :: BatchCreateAnnotationsRequest -> Encoding # toJSONList :: [BatchCreateAnnotationsRequest] -> Value # toEncodingList :: [BatchCreateAnnotationsRequest] -> Encoding #
FromJSON BatchCreateAnnotationsRequest #
Methods parseJSON :: Value -> Parser BatchCreateAnnotationsRequest # parseJSONList :: Value -> Parser [BatchCreateAnnotationsRequest] #
type Rep BatchCreateAnnotationsRequest #
type Rep BatchCreateAnnotationsRequest = D1 (MetaData "BatchCreateAnnotationsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "BatchCreateAnnotationsRequest'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_bcarAnnotations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Annotation]))) (S1 (MetaSel (Just Symbol "_bcarRequestId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

batchCreateAnnotationsRequest :: BatchCreateAnnotationsRequest #

Creates a value of BatchCreateAnnotationsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

bcarAnnotations
bcarRequestId

bcarAnnotations :: Lens' BatchCreateAnnotationsRequest [Annotation] #

The annotations to be created. At most 4096 can be specified in a single request.

bcarRequestId :: Lens' BatchCreateAnnotationsRequest (Maybe Text) #

A unique request ID which enables the server to detect duplicated requests. If provided, duplicated requests will result in the same response; if not provided, duplicated requests may result in duplicated data. For a given annotation set, callers should not reuse `request_id`s when writing different batches of annotations - behavior in this case is undefined. A common approach is to use a UUID. For batch jobs where worker crashes are a possibility, consider using some unique variant of a worker or run ID.

MergeVariantsRequest

data MergeVariantsRequest #

Instances

Eq MergeVariantsRequest #
Methods (==) :: MergeVariantsRequest -> MergeVariantsRequest -> Bool # (/=) :: MergeVariantsRequest -> MergeVariantsRequest -> Bool #
Data MergeVariantsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> MergeVariantsRequest -> c MergeVariantsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c MergeVariantsRequest # toConstr :: MergeVariantsRequest -> Constr # dataTypeOf :: MergeVariantsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c MergeVariantsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c MergeVariantsRequest) # gmapT :: (forall b. Data b => b -> b) -> MergeVariantsRequest -> MergeVariantsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> MergeVariantsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> MergeVariantsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequest -> m MergeVariantsRequest #
Show MergeVariantsRequest #
Methods showsPrec :: Int -> MergeVariantsRequest -> ShowS # show :: MergeVariantsRequest -> String # showList :: [MergeVariantsRequest] -> ShowS #
Generic MergeVariantsRequest #
Associated Types type Rep MergeVariantsRequest :: * -> * # Methods from :: MergeVariantsRequest -> Rep MergeVariantsRequest x # to :: Rep MergeVariantsRequest x -> MergeVariantsRequest #
ToJSON MergeVariantsRequest #
Methods toJSON :: MergeVariantsRequest -> Value # toEncoding :: MergeVariantsRequest -> Encoding # toJSONList :: [MergeVariantsRequest] -> Value # toEncodingList :: [MergeVariantsRequest] -> Encoding #
FromJSON MergeVariantsRequest #
Methods parseJSON :: Value -> Parser MergeVariantsRequest # parseJSONList :: Value -> Parser [MergeVariantsRequest] #
type Rep MergeVariantsRequest #
type Rep MergeVariantsRequest = D1 (MetaData "MergeVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "MergeVariantsRequest'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_mvrVariants") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Variant]))) ((::) (S1 (MetaSel (Just Symbol "_mvrVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_mvrInfoMergeConfig") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe MergeVariantsRequestInfoMergeConfig))))))

mergeVariantsRequest :: MergeVariantsRequest #

Creates a value of MergeVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

mvrVariants :: Lens' MergeVariantsRequest [Variant] #

The variants to be merged with existing variants.

mvrVariantSetId :: Lens' MergeVariantsRequest (Maybe Text) #

The destination variant set.

mvrInfoMergeConfig :: Lens' MergeVariantsRequest (Maybe MergeVariantsRequestInfoMergeConfig) #

A mapping between info field keys and the InfoMergeOperations to be performed on them.

ReadGroup

data ReadGroup #

A read group is all the data that's processed the same way by the sequencer.

See: readGroup smart constructor.

Instances

Eq ReadGroup #
Methods (==) :: ReadGroup -> ReadGroup -> Bool # (/=) :: ReadGroup -> ReadGroup -> Bool #
Data ReadGroup #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroup -> c ReadGroup # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroup # toConstr :: ReadGroup -> Constr # dataTypeOf :: ReadGroup -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroup) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroup) # gmapT :: (forall b. Data b => b -> b) -> ReadGroup -> ReadGroup # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroup -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroup -> r # gmapQ :: (forall d. Data d => d -> u) -> ReadGroup -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroup -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroup -> m ReadGroup #
Show ReadGroup #
Methods showsPrec :: Int -> ReadGroup -> ShowS # show :: ReadGroup -> String # showList :: [ReadGroup] -> ShowS #
Generic ReadGroup #
Associated Types type Rep ReadGroup :: * -> * # Methods from :: ReadGroup -> Rep ReadGroup x # to :: Rep ReadGroup x -> ReadGroup #
ToJSON ReadGroup #
Methods toJSON :: ReadGroup -> Value # toEncoding :: ReadGroup -> Encoding # toJSONList :: [ReadGroup] -> Value # toEncodingList :: [ReadGroup] -> Encoding #
FromJSON ReadGroup #
Methods parseJSON :: Value -> Parser ReadGroup # parseJSONList :: Value -> Parser [ReadGroup] #
type Rep ReadGroup #
type Rep ReadGroup = D1 (MetaData "ReadGroup" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ReadGroup'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_reaReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaPrograms") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Program])))) ((::) (S1 (MetaSel (Just Symbol "_reaExperiment") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Experiment))) ((::) (S1 (MetaSel (Just Symbol "_reaName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_reaId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaSampleId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_reaPredictedInsertSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) ((:*:) (S1 (MetaSel (Just Symbol "_reaDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_reaInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadGroupInfo))))))))

readGroup :: ReadGroup #

Creates a value of ReadGroup with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

reaReferenceSetId :: Lens' ReadGroup (Maybe Text) #

The reference set the reads in this read group are aligned to.

reaPrograms :: Lens' ReadGroup [Program] #

The programs used to generate this read group. Programs are always identical for all read groups within a read group set. For this reason, only the first read group in a returned set will have this field populated.

reaExperiment :: Lens' ReadGroup (Maybe Experiment) #

The experiment used to generate this read group.

reaName :: Lens' ReadGroup (Maybe Text) #

The read group name. This corresponds to the 'RG ID field in the SAM spec.

reaDataSetId :: Lens' ReadGroup (Maybe Text) #

The dataset to which this read group belongs.

reaId :: Lens' ReadGroup (Maybe Text) #

The server-generated read group ID, unique for all read groups. Note: This is different than the 'RG ID field in the SAM spec. For that value, see name.

reaSampleId :: Lens' ReadGroup (Maybe Text) #

A client-supplied sample identifier for the reads in this read group.

reaPredictedInsertSize :: Lens' ReadGroup (Maybe Int32) #

The predicted insert size of this read group. The insert size is the length the sequenced DNA fragment from end-to-end, not including the adapters.

reaDescription :: Lens' ReadGroup (Maybe Text) #

A free-form text description of this read group.

reaInfo :: Lens' ReadGroup (Maybe ReadGroupInfo) #

A map of additional read group information. This must be of the form map (string key mapping to a list of string values).

Operation

data Operation #

This resource represents a long-running operation that is the result of a network API call.

See: operation smart constructor.

Instances

Eq Operation #
Methods (==) :: Operation -> Operation -> Bool # (/=) :: Operation -> Operation -> Bool #
Data Operation #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Operation -> c Operation # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Operation # toConstr :: Operation -> Constr # dataTypeOf :: Operation -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Operation) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Operation) # gmapT :: (forall b. Data b => b -> b) -> Operation -> Operation # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Operation -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Operation -> r # gmapQ :: (forall d. Data d => d -> u) -> Operation -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Operation -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Operation -> m Operation # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Operation -> m Operation # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Operation -> m Operation #
Show Operation #
Methods showsPrec :: Int -> Operation -> ShowS # show :: Operation -> String # showList :: [Operation] -> ShowS #
Generic Operation #
Associated Types type Rep Operation :: * -> * # Methods from :: Operation -> Rep Operation x # to :: Rep Operation x -> Operation #
ToJSON Operation #
Methods toJSON :: Operation -> Value # toEncoding :: Operation -> Encoding # toJSONList :: [Operation] -> Value # toEncodingList :: [Operation] -> Encoding #
FromJSON Operation #
Methods parseJSON :: Value -> Parser Operation # parseJSONList :: Value -> Parser [Operation] #
type Rep Operation #
type Rep Operation = D1 (MetaData "Operation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Operation'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_oDone") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_oError") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Status)))) ((::) (S1 (MetaSel (Just Symbol "_oResponse") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationResponse))) ((::) (S1 (MetaSel (Just Symbol "_oName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_oMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationSchema)))))))

operation :: Operation #

Creates a value of Operation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

oDone :: Lens' Operation (Maybe Bool) #

If the value is `false`, it means the operation is still in progress. If true, the operation is completed, and either `error` or `response` is available.

oError :: Lens' Operation (Maybe Status) #

The error result of the operation in case of failure or cancellation.

oResponse :: Lens' Operation (Maybe OperationResponse) #

If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.

oName :: Lens' Operation (Maybe Text) #

The server-assigned name, which is only unique within the same service that originally returns it. For example: `operations/CJHU7Oi_ChDrveSpBRjfuL-qzoWAgEw`

oMetadata :: Lens' Operation (Maybe OperationSchema) #

An OperationMetadata object. This will always be returned with the Operation.

SearchReferenceSetsRequest

data SearchReferenceSetsRequest #

Instances

Eq SearchReferenceSetsRequest #
Methods (==) :: SearchReferenceSetsRequest -> SearchReferenceSetsRequest -> Bool # (/=) :: SearchReferenceSetsRequest -> SearchReferenceSetsRequest -> Bool #
Data SearchReferenceSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferenceSetsRequest -> c SearchReferenceSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferenceSetsRequest # toConstr :: SearchReferenceSetsRequest -> Constr # dataTypeOf :: SearchReferenceSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferenceSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferenceSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchReferenceSetsRequest -> SearchReferenceSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReferenceSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferenceSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsRequest -> m SearchReferenceSetsRequest #
Show SearchReferenceSetsRequest #
Methods showsPrec :: Int -> SearchReferenceSetsRequest -> ShowS # show :: SearchReferenceSetsRequest -> String # showList :: [SearchReferenceSetsRequest] -> ShowS #
Generic SearchReferenceSetsRequest #
Associated Types type Rep SearchReferenceSetsRequest :: * -> * # Methods from :: SearchReferenceSetsRequest -> Rep SearchReferenceSetsRequest x # to :: Rep SearchReferenceSetsRequest x -> SearchReferenceSetsRequest #
ToJSON SearchReferenceSetsRequest #
Methods toJSON :: SearchReferenceSetsRequest -> Value # toEncoding :: SearchReferenceSetsRequest -> Encoding # toJSONList :: [SearchReferenceSetsRequest] -> Value # toEncodingList :: [SearchReferenceSetsRequest] -> Encoding #
FromJSON SearchReferenceSetsRequest #
Methods parseJSON :: Value -> Parser SearchReferenceSetsRequest # parseJSONList :: Value -> Parser [SearchReferenceSetsRequest] #
type Rep SearchReferenceSetsRequest #
type Rep SearchReferenceSetsRequest = D1 (MetaData "SearchReferenceSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReferenceSetsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_srsrMD5checksums") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srsrAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((::) (S1 (MetaSel (Just Symbol "_srsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_srsrAssemblyId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchReferenceSetsRequest :: SearchReferenceSetsRequest #

Creates a value of SearchReferenceSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srsrMD5checksums :: Lens' SearchReferenceSetsRequest [Text] #

If present, return reference sets for which the md5checksum matches exactly.

srsrAccessions :: Lens' SearchReferenceSetsRequest [Text] #

If present, return reference sets for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `NC_000001.11`.

srsrPageToken :: Lens' SearchReferenceSetsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srsrAssemblyId :: Lens' SearchReferenceSetsRequest (Maybe Text) #

If present, return reference sets for which a substring of their `assemblyId` matches this string (case insensitive).

srsrPageSize :: Lens' SearchReferenceSetsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.

Empty

data Empty #

A generic empty message that you can re-use to avoid defining duplicated empty messages in your APIs. A typical example is to use it as the request or the response type of an API method. For instance: service Foo { rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty); } The JSON representation for `Empty` is empty JSON object `{}`.

See: empty smart constructor.

Instances

Eq Empty #
Methods (==) :: Empty -> Empty -> Bool # (/=) :: Empty -> Empty -> Bool #
Data Empty #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Empty -> c Empty # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Empty # toConstr :: Empty -> Constr # dataTypeOf :: Empty -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Empty) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Empty) # gmapT :: (forall b. Data b => b -> b) -> Empty -> Empty # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Empty -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Empty -> r # gmapQ :: (forall d. Data d => d -> u) -> Empty -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Empty -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Empty -> m Empty # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Empty -> m Empty # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Empty -> m Empty #
Show Empty #
Methods showsPrec :: Int -> Empty -> ShowS # show :: Empty -> String # showList :: [Empty] -> ShowS #
Generic Empty #
Associated Types type Rep Empty :: * -> * # Methods from :: Empty -> Rep Empty x # to :: Rep Empty x -> Empty #
ToJSON Empty #
Methods toJSON :: Empty -> Value # toEncoding :: Empty -> Encoding # toJSONList :: [Empty] -> Value # toEncodingList :: [Empty] -> Encoding #
FromJSON Empty #
Methods parseJSON :: Value -> Parser Empty # parseJSONList :: Value -> Parser [Empty] #
type Rep Empty #
type Rep Empty = D1 (MetaData "Empty" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Empty'" PrefixI False) U1)

empty :: Empty #

Creates a value of Empty with the minimum fields required to make a request.

AnnotationSetType

data AnnotationSetType #

The type of annotations contained within this set.

Constructors

ASTAnnotationTypeUnspecified	ANNOTATION_TYPE_UNSPECIFIED
ASTGeneric	`GENERIC` A `GENERIC` annotation type should be used when no other annotation type will suffice. This represents an untyped annotation of the reference genome.
ASTVariant	`VARIANT` A `VARIANT` annotation type.
ASTGene	`GENE` A `GENE` annotation type represents the existence of a gene at the associated reference coordinates. The start coordinate is typically the gene's transcription start site and the end is typically the end of the gene's last exon.
ASTTranscript	`TRANSCRIPT` A `TRANSCRIPT` annotation type represents the assertion that a particular region of the reference genome may be transcribed as RNA.

Instances

Enum AnnotationSetType #
Methods succ :: AnnotationSetType -> AnnotationSetType # pred :: AnnotationSetType -> AnnotationSetType # toEnum :: Int -> AnnotationSetType # fromEnum :: AnnotationSetType -> Int # enumFrom :: AnnotationSetType -> [AnnotationSetType] # enumFromThen :: AnnotationSetType -> AnnotationSetType -> [AnnotationSetType] # enumFromTo :: AnnotationSetType -> AnnotationSetType -> [AnnotationSetType] # enumFromThenTo :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType -> [AnnotationSetType] #
Eq AnnotationSetType #
Methods (==) :: AnnotationSetType -> AnnotationSetType -> Bool # (/=) :: AnnotationSetType -> AnnotationSetType -> Bool #
Data AnnotationSetType #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSetType -> c AnnotationSetType # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSetType # toConstr :: AnnotationSetType -> Constr # dataTypeOf :: AnnotationSetType -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSetType) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSetType) # gmapT :: (forall b. Data b => b -> b) -> AnnotationSetType -> AnnotationSetType # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetType -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetType -> r # gmapQ :: (forall d. Data d => d -> u) -> AnnotationSetType -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSetType -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetType -> m AnnotationSetType #
Ord AnnotationSetType #
Methods compare :: AnnotationSetType -> AnnotationSetType -> Ordering # (<) :: AnnotationSetType -> AnnotationSetType -> Bool # (<=) :: AnnotationSetType -> AnnotationSetType -> Bool # (>) :: AnnotationSetType -> AnnotationSetType -> Bool # (>=) :: AnnotationSetType -> AnnotationSetType -> Bool # max :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType # min :: AnnotationSetType -> AnnotationSetType -> AnnotationSetType #
Read AnnotationSetType #
Methods readsPrec :: Int -> ReadS AnnotationSetType # readList :: ReadS [AnnotationSetType] # readPrec :: ReadPrec AnnotationSetType # readListPrec :: ReadPrec [AnnotationSetType] #
Show AnnotationSetType #
Methods showsPrec :: Int -> AnnotationSetType -> ShowS # show :: AnnotationSetType -> String # showList :: [AnnotationSetType] -> ShowS #
Generic AnnotationSetType #
Associated Types type Rep AnnotationSetType :: * -> * # Methods from :: AnnotationSetType -> Rep AnnotationSetType x # to :: Rep AnnotationSetType x -> AnnotationSetType #
Hashable AnnotationSetType #
Methods hashWithSalt :: Int -> AnnotationSetType -> Int # hash :: AnnotationSetType -> Int #
ToJSON AnnotationSetType #
Methods toJSON :: AnnotationSetType -> Value # toEncoding :: AnnotationSetType -> Encoding # toJSONList :: [AnnotationSetType] -> Value # toEncodingList :: [AnnotationSetType] -> Encoding #
FromJSON AnnotationSetType #
Methods parseJSON :: Value -> Parser AnnotationSetType # parseJSONList :: Value -> Parser [AnnotationSetType] #
FromHttpApiData AnnotationSetType #
Methods parseUrlPiece :: Text -> Either Text AnnotationSetType # parseHeader :: ByteString -> Either Text AnnotationSetType # parseQueryParam :: Text -> Either Text AnnotationSetType #
ToHttpApiData AnnotationSetType #
Methods toUrlPiece :: AnnotationSetType -> Text # toEncodedUrlPiece :: AnnotationSetType -> Builder # toHeader :: AnnotationSetType -> ByteString # toQueryParam :: AnnotationSetType -> Text #
type Rep AnnotationSetType #
type Rep AnnotationSetType = D1 (MetaData "AnnotationSetType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) (C1 (MetaCons "ASTAnnotationTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "ASTGeneric" PrefixI False) U1)) ((:+:) (C1 (MetaCons "ASTVariant" PrefixI False) U1) ((:+:) (C1 (MetaCons "ASTGene" PrefixI False) U1) (C1 (MetaCons "ASTTranscript" PrefixI False) U1))))

SearchReferencesResponse

data SearchReferencesResponse #

Instances

Eq SearchReferencesResponse #
Methods (==) :: SearchReferencesResponse -> SearchReferencesResponse -> Bool # (/=) :: SearchReferencesResponse -> SearchReferencesResponse -> Bool #
Data SearchReferencesResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferencesResponse -> c SearchReferencesResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferencesResponse # toConstr :: SearchReferencesResponse -> Constr # dataTypeOf :: SearchReferencesResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferencesResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferencesResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchReferencesResponse -> SearchReferencesResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReferencesResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferencesResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesResponse -> m SearchReferencesResponse #
Show SearchReferencesResponse #
Methods showsPrec :: Int -> SearchReferencesResponse -> ShowS # show :: SearchReferencesResponse -> String # showList :: [SearchReferencesResponse] -> ShowS #
Generic SearchReferencesResponse #
Associated Types type Rep SearchReferencesResponse :: * -> * # Methods from :: SearchReferencesResponse -> Rep SearchReferencesResponse x # to :: Rep SearchReferencesResponse x -> SearchReferencesResponse #
ToJSON SearchReferencesResponse #
Methods toJSON :: SearchReferencesResponse -> Value # toEncoding :: SearchReferencesResponse -> Encoding # toJSONList :: [SearchReferencesResponse] -> Value # toEncodingList :: [SearchReferencesResponse] -> Encoding #
FromJSON SearchReferencesResponse #
Methods parseJSON :: Value -> Parser SearchReferencesResponse # parseJSONList :: Value -> Parser [SearchReferencesResponse] #
type Rep SearchReferencesResponse #
type Rep SearchReferencesResponse = D1 (MetaData "SearchReferencesResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReferencesResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srrReferences") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Reference])))))

searchReferencesResponse :: SearchReferencesResponse #

Creates a value of SearchReferencesResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srrNextPageToken :: Lens' SearchReferencesResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srrReferences :: Lens' SearchReferencesResponse [Reference] #

The matching references.

VariantSetMetadata

data VariantSetMetadata #

Metadata describes a single piece of variant call metadata. These data include a top level key and either a single value string (value) or a list of key-value pairs (info.) Value and info are mutually exclusive.

See: variantSetMetadata smart constructor.

Instances

Eq VariantSetMetadata #
Methods (==) :: VariantSetMetadata -> VariantSetMetadata -> Bool # (/=) :: VariantSetMetadata -> VariantSetMetadata -> Bool #
Data VariantSetMetadata #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadata -> c VariantSetMetadata # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadata # toConstr :: VariantSetMetadata -> Constr # dataTypeOf :: VariantSetMetadata -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadata) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadata) # gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadata -> VariantSetMetadata # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadata -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadata -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadata -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadata -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadata -> m VariantSetMetadata #
Show VariantSetMetadata #
Methods showsPrec :: Int -> VariantSetMetadata -> ShowS # show :: VariantSetMetadata -> String # showList :: [VariantSetMetadata] -> ShowS #
Generic VariantSetMetadata #
Associated Types type Rep VariantSetMetadata :: * -> * # Methods from :: VariantSetMetadata -> Rep VariantSetMetadata x # to :: Rep VariantSetMetadata x -> VariantSetMetadata #
ToJSON VariantSetMetadata #
Methods toJSON :: VariantSetMetadata -> Value # toEncoding :: VariantSetMetadata -> Encoding # toJSONList :: [VariantSetMetadata] -> Value # toEncodingList :: [VariantSetMetadata] -> Encoding #
FromJSON VariantSetMetadata #
Methods parseJSON :: Value -> Parser VariantSetMetadata # parseJSONList :: Value -> Parser [VariantSetMetadata] #
type Rep VariantSetMetadata #
type Rep VariantSetMetadata = D1 (MetaData "VariantSetMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "VariantSetMetadata'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_vsmValue") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_vsmKey") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsmId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_vsmType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantSetMetadataType))) (S1 (MetaSel (Just Symbol "_vsmNumber") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_vsmDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsmInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantSetMetadataInfo)))))))

variantSetMetadata :: VariantSetMetadata #

Creates a value of VariantSetMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vsmValue :: Lens' VariantSetMetadata (Maybe Text) #

The value field for simple metadata

vsmKey :: Lens' VariantSetMetadata (Maybe Text) #

The top-level key.

vsmId :: Lens' VariantSetMetadata (Maybe Text) #

User-provided ID field, not enforced by this API. Two or more pieces of structured metadata with identical id and key fields are considered equivalent.

vsmType :: Lens' VariantSetMetadata (Maybe VariantSetMetadataType) #

The type of data. Possible types include: Integer, Float, Flag, Character, and String.

vsmNumber :: Lens' VariantSetMetadata (Maybe Text) #

The number of values that can be included in a field described by this metadata.

vsmDescription :: Lens' VariantSetMetadata (Maybe Text) #

A textual description of this metadata.

vsmInfo :: Lens' VariantSetMetadata (Maybe VariantSetMetadataInfo) #

Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).

CallSet

data CallSet #

A call set is a collection of variant calls, typically for one sample. It belongs to a variant set. For more genomics resource definitions, see Fundamentals of Google Genomics

See: callSet smart constructor.

Instances

Eq CallSet #
Methods (==) :: CallSet -> CallSet -> Bool # (/=) :: CallSet -> CallSet -> Bool #
Data CallSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CallSet -> c CallSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CallSet # toConstr :: CallSet -> Constr # dataTypeOf :: CallSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CallSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CallSet) # gmapT :: (forall b. Data b => b -> b) -> CallSet -> CallSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CallSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CallSet -> r # gmapQ :: (forall d. Data d => d -> u) -> CallSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CallSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSet -> m CallSet #
Show CallSet #
Methods showsPrec :: Int -> CallSet -> ShowS # show :: CallSet -> String # showList :: [CallSet] -> ShowS #
Generic CallSet #
Associated Types type Rep CallSet :: * -> * # Methods from :: CallSet -> Rep CallSet x # to :: Rep CallSet x -> CallSet #
ToJSON CallSet #
Methods toJSON :: CallSet -> Value # toEncoding :: CallSet -> Encoding # toJSONList :: [CallSet] -> Value # toEncodingList :: [CallSet] -> Encoding #
FromJSON CallSet #
Methods parseJSON :: Value -> Parser CallSet # parseJSONList :: Value -> Parser [CallSet] #
type Rep CallSet #
type Rep CallSet = D1 (MetaData "CallSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "CallSet'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_csCreated") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_csName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_csId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) (S1 (MetaSel (Just Symbol "_csSampleId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_csVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_csInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CallSetInfo)))))))

callSet :: CallSet #

Creates a value of CallSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

csCreated :: Lens' CallSet (Maybe Int64) #

The date this call set was created in milliseconds from the epoch.

csName :: Lens' CallSet (Maybe Text) #

The call set name.

csId :: Lens' CallSet (Maybe Text) #

The server-generated call set ID, unique across all call sets.

csSampleId :: Lens' CallSet (Maybe Text) #

The sample ID this call set corresponds to.

csVariantSetIds :: Lens' CallSet [Text] #

The IDs of the variant sets this call set belongs to. This field must have exactly length one, as a call set belongs to a single variant set. This field is repeated for compatibility with the GA4GH 0.5.1 API.

csInfo :: Lens' CallSet (Maybe CallSetInfo) #

A map of additional call set information. This must be of the form map (string key mapping to a list of string values).

CoverageBucket

data CoverageBucket #

A bucket over which read coverage has been precomputed. A bucket corresponds to a specific range of the reference sequence.

See: coverageBucket smart constructor.

Instances

Eq CoverageBucket #
Methods (==) :: CoverageBucket -> CoverageBucket -> Bool # (/=) :: CoverageBucket -> CoverageBucket -> Bool #
Data CoverageBucket #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CoverageBucket -> c CoverageBucket # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CoverageBucket # toConstr :: CoverageBucket -> Constr # dataTypeOf :: CoverageBucket -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CoverageBucket) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CoverageBucket) # gmapT :: (forall b. Data b => b -> b) -> CoverageBucket -> CoverageBucket # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CoverageBucket -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CoverageBucket -> r # gmapQ :: (forall d. Data d => d -> u) -> CoverageBucket -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CoverageBucket -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CoverageBucket -> m CoverageBucket #
Show CoverageBucket #
Methods showsPrec :: Int -> CoverageBucket -> ShowS # show :: CoverageBucket -> String # showList :: [CoverageBucket] -> ShowS #
Generic CoverageBucket #
Associated Types type Rep CoverageBucket :: * -> * # Methods from :: CoverageBucket -> Rep CoverageBucket x # to :: Rep CoverageBucket x -> CoverageBucket #
ToJSON CoverageBucket #
Methods toJSON :: CoverageBucket -> Value # toEncoding :: CoverageBucket -> Encoding # toJSONList :: [CoverageBucket] -> Value # toEncodingList :: [CoverageBucket] -> Encoding #
FromJSON CoverageBucket #
Methods parseJSON :: Value -> Parser CoverageBucket # parseJSONList :: Value -> Parser [CoverageBucket] #
type Rep CoverageBucket #
type Rep CoverageBucket = D1 (MetaData "CoverageBucket" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "CoverageBucket'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_cbRange") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Range))) (S1 (MetaSel (Just Symbol "_cbMeanCoverage") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Double))))))

coverageBucket :: CoverageBucket #

Creates a value of CoverageBucket with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

cbRange
cbMeanCoverage

cbRange :: Lens' CoverageBucket (Maybe Range) #

The genomic coordinate range spanned by this bucket.

cbMeanCoverage :: Lens' CoverageBucket (Maybe Double) #

The average number of reads which are aligned to each individual reference base in this bucket.

VariantAnnotation

data VariantAnnotation #

Instances

Eq VariantAnnotation #
Methods (==) :: VariantAnnotation -> VariantAnnotation -> Bool # (/=) :: VariantAnnotation -> VariantAnnotation -> Bool #
Data VariantAnnotation #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotation -> c VariantAnnotation # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotation # toConstr :: VariantAnnotation -> Constr # dataTypeOf :: VariantAnnotation -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotation) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotation) # gmapT :: (forall b. Data b => b -> b) -> VariantAnnotation -> VariantAnnotation # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotation -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotation -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotation -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotation -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotation -> m VariantAnnotation #
Show VariantAnnotation #
Methods showsPrec :: Int -> VariantAnnotation -> ShowS # show :: VariantAnnotation -> String # showList :: [VariantAnnotation] -> ShowS #
Generic VariantAnnotation #
Associated Types type Rep VariantAnnotation :: * -> * # Methods from :: VariantAnnotation -> Rep VariantAnnotation x # to :: Rep VariantAnnotation x -> VariantAnnotation #
ToJSON VariantAnnotation #
Methods toJSON :: VariantAnnotation -> Value # toEncoding :: VariantAnnotation -> Encoding # toJSONList :: [VariantAnnotation] -> Value # toEncodingList :: [VariantAnnotation] -> Encoding #
FromJSON VariantAnnotation #
Methods parseJSON :: Value -> Parser VariantAnnotation # parseJSONList :: Value -> Parser [VariantAnnotation] #
type Rep VariantAnnotation #
type Rep VariantAnnotation = D1 (MetaData "VariantAnnotation" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "VariantAnnotation'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_vaEffect") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationEffect))) ((::) (S1 (MetaSel (Just Symbol "_vaClinicalSignificance") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationClinicalSignificance))) (S1 (MetaSel (Just Symbol "_vaAlternateBases") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_vaGeneId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vaConditions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ClinicalCondition])))) ((::) (S1 (MetaSel (Just Symbol "_vaType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe VariantAnnotationType))) (S1 (MetaSel (Just Symbol "_vaTranscriptIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

variantAnnotation :: VariantAnnotation #

Creates a value of VariantAnnotation with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vaEffect :: Lens' VariantAnnotation (Maybe VariantAnnotationEffect) #

Effect of the variant on the coding sequence.

vaClinicalSignificance :: Lens' VariantAnnotation (Maybe VariantAnnotationClinicalSignificance) #

Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/

vaAlternateBases :: Lens' VariantAnnotation (Maybe Text) #

The alternate allele for this variant. If multiple alternate alleles exist at this location, create a separate variant for each one, as they may represent distinct conditions.

vaGeneId :: Lens' VariantAnnotation (Maybe Text) #

Google annotation ID of the gene affected by this variant. This should be provided when the variant is created.

vaConditions :: Lens' VariantAnnotation [ClinicalCondition] #

The set of conditions associated with this variant. A condition describes the way a variant influences human health.

vaType :: Lens' VariantAnnotation (Maybe VariantAnnotationType) #

Type has been adapted from ClinVar's list of variant types.

vaTranscriptIds :: Lens' VariantAnnotation [Text] #

Google annotation IDs of the transcripts affected by this variant. These should be provided when the variant is created.

VariantAnnotationClinicalSignificance

data VariantAnnotationClinicalSignificance #

Describes the clinical significance of a variant. It is adapted from the ClinVar controlled vocabulary for clinical significance described at: http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/

Constructors

ClinicalSignificanceUnspecified	CLINICAL_SIGNIFICANCE_UNSPECIFIED
ClinicalSignificanceOther	`CLINICAL_SIGNIFICANCE_OTHER` `OTHER` should be used when no other clinical significance value will suffice.
Uncertain	UNCERTAIN
Benign	BENIGN
LikelyBenign	LIKELY_BENIGN
LikelyPathogenic	LIKELY_PATHOGENIC
Pathogenic	PATHOGENIC
DrugResponse	DRUG_RESPONSE
Histocompatibility	HISTOCOMPATIBILITY
ConfersSensitivity	CONFERS_SENSITIVITY
RiskFactor	RISK_FACTOR
Association	ASSOCIATION
Protective	PROTECTIVE
MultipleReported	`MULTIPLE_REPORTED` `MULTIPLE_REPORTED` should be used when multiple clinical signficances are reported for a variant. The original clinical significance values may be provided in the `info` field.

Instances

Enum VariantAnnotationClinicalSignificance #
Methods succ :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance # pred :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance # toEnum :: Int -> VariantAnnotationClinicalSignificance # fromEnum :: VariantAnnotationClinicalSignificance -> Int # enumFrom :: VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance] # enumFromThen :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance] # enumFromTo :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance] # enumFromThenTo :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> [VariantAnnotationClinicalSignificance] #
Eq VariantAnnotationClinicalSignificance #
Methods (==) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool # (/=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool #
Data VariantAnnotationClinicalSignificance #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationClinicalSignificance -> c VariantAnnotationClinicalSignificance # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationClinicalSignificance # toConstr :: VariantAnnotationClinicalSignificance -> Constr # dataTypeOf :: VariantAnnotationClinicalSignificance -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationClinicalSignificance) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationClinicalSignificance) # gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationClinicalSignificance -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationClinicalSignificance -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationClinicalSignificance -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationClinicalSignificance -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationClinicalSignificance -> m VariantAnnotationClinicalSignificance #
Ord VariantAnnotationClinicalSignificance #
Methods compare :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Ordering # (<) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool # (<=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool # (>) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool # (>=) :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> Bool # max :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance # min :: VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance -> VariantAnnotationClinicalSignificance #
Read VariantAnnotationClinicalSignificance #
Methods readsPrec :: Int -> ReadS VariantAnnotationClinicalSignificance # readList :: ReadS [VariantAnnotationClinicalSignificance] # readPrec :: ReadPrec VariantAnnotationClinicalSignificance # readListPrec :: ReadPrec [VariantAnnotationClinicalSignificance] #
Show VariantAnnotationClinicalSignificance #
Methods showsPrec :: Int -> VariantAnnotationClinicalSignificance -> ShowS # show :: VariantAnnotationClinicalSignificance -> String # showList :: [VariantAnnotationClinicalSignificance] -> ShowS #
Generic VariantAnnotationClinicalSignificance #
Associated Types type Rep VariantAnnotationClinicalSignificance :: * -> * # Methods from :: VariantAnnotationClinicalSignificance -> Rep VariantAnnotationClinicalSignificance x # to :: Rep VariantAnnotationClinicalSignificance x -> VariantAnnotationClinicalSignificance #
Hashable VariantAnnotationClinicalSignificance #
Methods hashWithSalt :: Int -> VariantAnnotationClinicalSignificance -> Int # hash :: VariantAnnotationClinicalSignificance -> Int #
ToJSON VariantAnnotationClinicalSignificance #
Methods toJSON :: VariantAnnotationClinicalSignificance -> Value # toEncoding :: VariantAnnotationClinicalSignificance -> Encoding # toJSONList :: [VariantAnnotationClinicalSignificance] -> Value # toEncodingList :: [VariantAnnotationClinicalSignificance] -> Encoding #
FromJSON VariantAnnotationClinicalSignificance #
Methods parseJSON :: Value -> Parser VariantAnnotationClinicalSignificance # parseJSONList :: Value -> Parser [VariantAnnotationClinicalSignificance] #
FromHttpApiData VariantAnnotationClinicalSignificance #
Methods parseUrlPiece :: Text -> Either Text VariantAnnotationClinicalSignificance # parseHeader :: ByteString -> Either Text VariantAnnotationClinicalSignificance # parseQueryParam :: Text -> Either Text VariantAnnotationClinicalSignificance #
ToHttpApiData VariantAnnotationClinicalSignificance #
Methods toUrlPiece :: VariantAnnotationClinicalSignificance -> Text # toEncodedUrlPiece :: VariantAnnotationClinicalSignificance -> Builder # toHeader :: VariantAnnotationClinicalSignificance -> ByteString # toQueryParam :: VariantAnnotationClinicalSignificance -> Text #
type Rep VariantAnnotationClinicalSignificance #
type Rep VariantAnnotationClinicalSignificance = D1 (MetaData "VariantAnnotationClinicalSignificance" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "ClinicalSignificanceUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "ClinicalSignificanceOther" PrefixI False) U1) (C1 (MetaCons "Uncertain" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "Benign" PrefixI False) U1) (C1 (MetaCons "LikelyBenign" PrefixI False) U1)) ((:+:) (C1 (MetaCons "LikelyPathogenic" PrefixI False) U1) (C1 (MetaCons "Pathogenic" PrefixI False) U1)))) ((:+:) ((:+:) (C1 (MetaCons "DrugResponse" PrefixI False) U1) ((:+:) (C1 (MetaCons "Histocompatibility" PrefixI False) U1) (C1 (MetaCons "ConfersSensitivity" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "RiskFactor" PrefixI False) U1) (C1 (MetaCons "Association" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Protective" PrefixI False) U1) (C1 (MetaCons "MultipleReported" PrefixI False) U1)))))

SearchReadGroupSetsRequest

data SearchReadGroupSetsRequest #

The read group set search request.

See: searchReadGroupSetsRequest smart constructor.

Instances

Eq SearchReadGroupSetsRequest #
Methods (==) :: SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest -> Bool # (/=) :: SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest -> Bool #
Data SearchReadGroupSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadGroupSetsRequest -> c SearchReadGroupSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadGroupSetsRequest # toConstr :: SearchReadGroupSetsRequest -> Constr # dataTypeOf :: SearchReadGroupSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadGroupSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadGroupSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchReadGroupSetsRequest -> SearchReadGroupSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReadGroupSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadGroupSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsRequest -> m SearchReadGroupSetsRequest #
Show SearchReadGroupSetsRequest #
Methods showsPrec :: Int -> SearchReadGroupSetsRequest -> ShowS # show :: SearchReadGroupSetsRequest -> String # showList :: [SearchReadGroupSetsRequest] -> ShowS #
Generic SearchReadGroupSetsRequest #
Associated Types type Rep SearchReadGroupSetsRequest :: * -> * # Methods from :: SearchReadGroupSetsRequest -> Rep SearchReadGroupSetsRequest x # to :: Rep SearchReadGroupSetsRequest x -> SearchReadGroupSetsRequest #
ToJSON SearchReadGroupSetsRequest #
Methods toJSON :: SearchReadGroupSetsRequest -> Value # toEncoding :: SearchReadGroupSetsRequest -> Encoding # toJSONList :: [SearchReadGroupSetsRequest] -> Value # toEncodingList :: [SearchReadGroupSetsRequest] -> Encoding #
FromJSON SearchReadGroupSetsRequest #
Methods parseJSON :: Value -> Parser SearchReadGroupSetsRequest # parseJSONList :: Value -> Parser [SearchReadGroupSetsRequest] #
type Rep SearchReadGroupSetsRequest #
type Rep SearchReadGroupSetsRequest = D1 (MetaData "SearchReadGroupSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReadGroupSetsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_srgsrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srgsrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_srgsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srgsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchReadGroupSetsRequest :: SearchReadGroupSetsRequest #

Creates a value of SearchReadGroupSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srgsrDataSetIds :: Lens' SearchReadGroupSetsRequest [Text] #

Restricts this query to read group sets within the given datasets. At least one ID must be provided.

srgsrName :: Lens' SearchReadGroupSetsRequest (Maybe Text) #

Only return read group sets for which a substring of the name matches this string.

srgsrPageToken :: Lens' SearchReadGroupSetsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srgsrPageSize :: Lens' SearchReadGroupSetsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 1024.

Reference

data Reference #

A reference is a canonical assembled DNA sequence, intended to act as a reference coordinate space for other genomic annotations. A single reference might represent the human chromosome 1 or mitochandrial DNA, for instance. A reference belongs to one or more reference sets. For more genomics resource definitions, see Fundamentals of Google Genomics

See: reference smart constructor.

Instances

Eq Reference #
Methods (==) :: Reference -> Reference -> Bool # (/=) :: Reference -> Reference -> Bool #
Data Reference #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Reference -> c Reference # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Reference # toConstr :: Reference -> Constr # dataTypeOf :: Reference -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Reference) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Reference) # gmapT :: (forall b. Data b => b -> b) -> Reference -> Reference # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Reference -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Reference -> r # gmapQ :: (forall d. Data d => d -> u) -> Reference -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Reference -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Reference -> m Reference # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Reference -> m Reference # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Reference -> m Reference #
Show Reference #
Methods showsPrec :: Int -> Reference -> ShowS # show :: Reference -> String # showList :: [Reference] -> ShowS #
Generic Reference #
Associated Types type Rep Reference :: * -> * # Methods from :: Reference -> Rep Reference x # to :: Rep Reference x -> Reference #
ToJSON Reference #
Methods toJSON :: Reference -> Value # toEncoding :: Reference -> Encoding # toJSONList :: [Reference] -> Value # toEncodingList :: [Reference] -> Encoding #
FromJSON Reference #
Methods parseJSON :: Value -> Parser Reference # parseJSONList :: Value -> Parser [Reference] #
type Rep Reference #
type Rep Reference = D1 (MetaData "Reference" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Reference'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_refLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_refSourceAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_refMD5checksum") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_refName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_refNcbiTaxonId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))) ((::) (S1 (MetaSel (Just Symbol "_refId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_refSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

reference :: Reference #

Creates a value of Reference with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

refLength :: Lens' Reference (Maybe Int64) #

The length of this reference's sequence.

refSourceAccessions :: Lens' Reference [Text] #

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `GCF_000001405.26`.

refMD5checksum :: Lens' Reference (Maybe Text) #

MD5 of the upper-case sequence excluding all whitespace characters (this is equivalent to SQ:M5 in SAM). This value is represented in lower case hexadecimal format.

refName :: Lens' Reference (Maybe Text) #

The name of this reference, for example `22`.

refNcbiTaxonId :: Lens' Reference (Maybe Int32) #

ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.

refId :: Lens' Reference (Maybe Text) #

The server-generated reference ID, unique across all references.

refSourceURI :: Lens' Reference (Maybe Text) #

The URI from which the sequence was obtained. Typically specifies a FASTA format file.

VariantCallInfo

data VariantCallInfo #

A map of additional variant call information. This must be of the form map (string key mapping to a list of string values).

See: variantCallInfo smart constructor.

Instances

Eq VariantCallInfo #
Methods (==) :: VariantCallInfo -> VariantCallInfo -> Bool # (/=) :: VariantCallInfo -> VariantCallInfo -> Bool #
Data VariantCallInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantCallInfo -> c VariantCallInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantCallInfo # toConstr :: VariantCallInfo -> Constr # dataTypeOf :: VariantCallInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantCallInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantCallInfo) # gmapT :: (forall b. Data b => b -> b) -> VariantCallInfo -> VariantCallInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantCallInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantCallInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantCallInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantCallInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantCallInfo -> m VariantCallInfo #
Show VariantCallInfo #
Methods showsPrec :: Int -> VariantCallInfo -> ShowS # show :: VariantCallInfo -> String # showList :: [VariantCallInfo] -> ShowS #
Generic VariantCallInfo #
Associated Types type Rep VariantCallInfo :: * -> * # Methods from :: VariantCallInfo -> Rep VariantCallInfo x # to :: Rep VariantCallInfo x -> VariantCallInfo #
ToJSON VariantCallInfo #
Methods toJSON :: VariantCallInfo -> Value # toEncoding :: VariantCallInfo -> Encoding # toJSONList :: [VariantCallInfo] -> Value # toEncodingList :: [VariantCallInfo] -> Encoding #
FromJSON VariantCallInfo #
Methods parseJSON :: Value -> Parser VariantCallInfo # parseJSONList :: Value -> Parser [VariantCallInfo] #
type Rep VariantCallInfo #
type Rep VariantCallInfo = D1 (MetaData "VariantCallInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "VariantCallInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_vciAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantCallInfo #

Arguments

:: HashMap Text [JSONValue]	`vciAddtional`
-> VariantCallInfo

Creates a value of VariantCallInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vciAddtional

vciAddtional :: Lens' VariantCallInfo (HashMap Text [JSONValue]) #

ReadGroupInfo

data ReadGroupInfo #

A map of additional read group information. This must be of the form map (string key mapping to a list of string values).

See: readGroupInfo smart constructor.

Instances

Eq ReadGroupInfo #
Methods (==) :: ReadGroupInfo -> ReadGroupInfo -> Bool # (/=) :: ReadGroupInfo -> ReadGroupInfo -> Bool #
Data ReadGroupInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupInfo -> c ReadGroupInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupInfo # toConstr :: ReadGroupInfo -> Constr # dataTypeOf :: ReadGroupInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupInfo) # gmapT :: (forall b. Data b => b -> b) -> ReadGroupInfo -> ReadGroupInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> ReadGroupInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupInfo -> m ReadGroupInfo #
Show ReadGroupInfo #
Methods showsPrec :: Int -> ReadGroupInfo -> ShowS # show :: ReadGroupInfo -> String # showList :: [ReadGroupInfo] -> ShowS #
Generic ReadGroupInfo #
Associated Types type Rep ReadGroupInfo :: * -> * # Methods from :: ReadGroupInfo -> Rep ReadGroupInfo x # to :: Rep ReadGroupInfo x -> ReadGroupInfo #
ToJSON ReadGroupInfo #
Methods toJSON :: ReadGroupInfo -> Value # toEncoding :: ReadGroupInfo -> Encoding # toJSONList :: [ReadGroupInfo] -> Value # toEncodingList :: [ReadGroupInfo] -> Encoding #
FromJSON ReadGroupInfo #
Methods parseJSON :: Value -> Parser ReadGroupInfo # parseJSONList :: Value -> Parser [ReadGroupInfo] #
type Rep ReadGroupInfo #
type Rep ReadGroupInfo = D1 (MetaData "ReadGroupInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ReadGroupInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_rgiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readGroupInfo #

Arguments

:: HashMap Text [JSONValue]	`rgiAddtional`
-> ReadGroupInfo

Creates a value of ReadGroupInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rgiAddtional

rgiAddtional :: Lens' ReadGroupInfo (HashMap Text [JSONValue]) #

StatusDetailsItem

data StatusDetailsItem #

Instances

Eq StatusDetailsItem #
Methods (==) :: StatusDetailsItem -> StatusDetailsItem -> Bool # (/=) :: StatusDetailsItem -> StatusDetailsItem -> Bool #
Data StatusDetailsItem #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> StatusDetailsItem -> c StatusDetailsItem # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c StatusDetailsItem # toConstr :: StatusDetailsItem -> Constr # dataTypeOf :: StatusDetailsItem -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c StatusDetailsItem) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c StatusDetailsItem) # gmapT :: (forall b. Data b => b -> b) -> StatusDetailsItem -> StatusDetailsItem # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> StatusDetailsItem -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> StatusDetailsItem -> r # gmapQ :: (forall d. Data d => d -> u) -> StatusDetailsItem -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> StatusDetailsItem -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> StatusDetailsItem -> m StatusDetailsItem #
Show StatusDetailsItem #
Methods showsPrec :: Int -> StatusDetailsItem -> ShowS # show :: StatusDetailsItem -> String # showList :: [StatusDetailsItem] -> ShowS #
Generic StatusDetailsItem #
Associated Types type Rep StatusDetailsItem :: * -> * # Methods from :: StatusDetailsItem -> Rep StatusDetailsItem x # to :: Rep StatusDetailsItem x -> StatusDetailsItem #
ToJSON StatusDetailsItem #
Methods toJSON :: StatusDetailsItem -> Value # toEncoding :: StatusDetailsItem -> Encoding # toJSONList :: [StatusDetailsItem] -> Value # toEncodingList :: [StatusDetailsItem] -> Encoding #
FromJSON StatusDetailsItem #
Methods parseJSON :: Value -> Parser StatusDetailsItem # parseJSONList :: Value -> Parser [StatusDetailsItem] #
type Rep StatusDetailsItem #
type Rep StatusDetailsItem = D1 (MetaData "StatusDetailsItem" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "StatusDetailsItem'" PrefixI True) (S1 (MetaSel (Just Symbol "_sdiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

statusDetailsItem #

Arguments

:: HashMap Text JSONValue	`sdiAddtional`
-> StatusDetailsItem

Creates a value of StatusDetailsItem with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sdiAddtional

sdiAddtional :: Lens' StatusDetailsItem (HashMap Text JSONValue) #

Properties of the object. Contains field 'type with type URL.

SearchCallSetsResponse

data SearchCallSetsResponse #

The call set search response.

See: searchCallSetsResponse smart constructor.

Instances

Eq SearchCallSetsResponse #
Methods (==) :: SearchCallSetsResponse -> SearchCallSetsResponse -> Bool # (/=) :: SearchCallSetsResponse -> SearchCallSetsResponse -> Bool #
Data SearchCallSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchCallSetsResponse -> c SearchCallSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchCallSetsResponse # toConstr :: SearchCallSetsResponse -> Constr # dataTypeOf :: SearchCallSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchCallSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchCallSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchCallSetsResponse -> SearchCallSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchCallSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchCallSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsResponse -> m SearchCallSetsResponse #
Show SearchCallSetsResponse #
Methods showsPrec :: Int -> SearchCallSetsResponse -> ShowS # show :: SearchCallSetsResponse -> String # showList :: [SearchCallSetsResponse] -> ShowS #
Generic SearchCallSetsResponse #
Associated Types type Rep SearchCallSetsResponse :: * -> * # Methods from :: SearchCallSetsResponse -> Rep SearchCallSetsResponse x # to :: Rep SearchCallSetsResponse x -> SearchCallSetsResponse #
ToJSON SearchCallSetsResponse #
Methods toJSON :: SearchCallSetsResponse -> Value # toEncoding :: SearchCallSetsResponse -> Encoding # toJSONList :: [SearchCallSetsResponse] -> Value # toEncodingList :: [SearchCallSetsResponse] -> Encoding #
FromJSON SearchCallSetsResponse #
Methods parseJSON :: Value -> Parser SearchCallSetsResponse # parseJSONList :: Value -> Parser [SearchCallSetsResponse] #
type Rep SearchCallSetsResponse #
type Rep SearchCallSetsResponse = D1 (MetaData "SearchCallSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchCallSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_scsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_scsrCallSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CallSet])))))

searchCallSetsResponse :: SearchCallSetsResponse #

Creates a value of SearchCallSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

scsrNextPageToken :: Lens' SearchCallSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

scsrCallSets :: Lens' SearchCallSetsResponse [CallSet] #

The list of matching call sets.

SetIAMPolicyRequest

data SetIAMPolicyRequest #

Request message for `SetIamPolicy` method.

See: setIAMPolicyRequest smart constructor.

Instances

Eq SetIAMPolicyRequest #
Methods (==) :: SetIAMPolicyRequest -> SetIAMPolicyRequest -> Bool # (/=) :: SetIAMPolicyRequest -> SetIAMPolicyRequest -> Bool #
Data SetIAMPolicyRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SetIAMPolicyRequest -> c SetIAMPolicyRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SetIAMPolicyRequest # toConstr :: SetIAMPolicyRequest -> Constr # dataTypeOf :: SetIAMPolicyRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SetIAMPolicyRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SetIAMPolicyRequest) # gmapT :: (forall b. Data b => b -> b) -> SetIAMPolicyRequest -> SetIAMPolicyRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SetIAMPolicyRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SetIAMPolicyRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SetIAMPolicyRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SetIAMPolicyRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SetIAMPolicyRequest -> m SetIAMPolicyRequest #
Show SetIAMPolicyRequest #
Methods showsPrec :: Int -> SetIAMPolicyRequest -> ShowS # show :: SetIAMPolicyRequest -> String # showList :: [SetIAMPolicyRequest] -> ShowS #
Generic SetIAMPolicyRequest #
Associated Types type Rep SetIAMPolicyRequest :: * -> * # Methods from :: SetIAMPolicyRequest -> Rep SetIAMPolicyRequest x # to :: Rep SetIAMPolicyRequest x -> SetIAMPolicyRequest #
ToJSON SetIAMPolicyRequest #
Methods toJSON :: SetIAMPolicyRequest -> Value # toEncoding :: SetIAMPolicyRequest -> Encoding # toJSONList :: [SetIAMPolicyRequest] -> Value # toEncodingList :: [SetIAMPolicyRequest] -> Encoding #
FromJSON SetIAMPolicyRequest #
Methods parseJSON :: Value -> Parser SetIAMPolicyRequest # parseJSONList :: Value -> Parser [SetIAMPolicyRequest] #
type Rep SetIAMPolicyRequest #
type Rep SetIAMPolicyRequest = D1 (MetaData "SetIAMPolicyRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "SetIAMPolicyRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_siprPolicy") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe Policy))))

setIAMPolicyRequest :: SetIAMPolicyRequest #

Creates a value of SetIAMPolicyRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

siprPolicy

siprPolicy :: Lens' SetIAMPolicyRequest (Maybe Policy) #

REQUIRED: The complete policy to be applied to the `resource`. The size of the policy is limited to a few 10s of KB. An empty policy is a valid policy but certain Cloud Platform services (such as Projects) might reject them.

SearchReadsRequest

data SearchReadsRequest #

The read search request.

See: searchReadsRequest smart constructor.

Instances

Eq SearchReadsRequest #
Methods (==) :: SearchReadsRequest -> SearchReadsRequest -> Bool # (/=) :: SearchReadsRequest -> SearchReadsRequest -> Bool #
Data SearchReadsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadsRequest -> c SearchReadsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadsRequest # toConstr :: SearchReadsRequest -> Constr # dataTypeOf :: SearchReadsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchReadsRequest -> SearchReadsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReadsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsRequest -> m SearchReadsRequest #
Show SearchReadsRequest #
Methods showsPrec :: Int -> SearchReadsRequest -> ShowS # show :: SearchReadsRequest -> String # showList :: [SearchReadsRequest] -> ShowS #
Generic SearchReadsRequest #
Associated Types type Rep SearchReadsRequest :: * -> * # Methods from :: SearchReadsRequest -> Rep SearchReadsRequest x # to :: Rep SearchReadsRequest x -> SearchReadsRequest #
ToJSON SearchReadsRequest #
Methods toJSON :: SearchReadsRequest -> Value # toEncoding :: SearchReadsRequest -> Encoding # toJSONList :: [SearchReadsRequest] -> Value # toEncodingList :: [SearchReadsRequest] -> Encoding #
FromJSON SearchReadsRequest #
Methods parseJSON :: Value -> Parser SearchReadsRequest # parseJSONList :: Value -> Parser [SearchReadsRequest] #
type Rep SearchReadsRequest #
type Rep SearchReadsRequest = D1 (MetaData "SearchReadsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReadsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_srrStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_srrReadGroupIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_srrReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_srrEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_srrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_srrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_srrReadGroupSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

searchReadsRequest :: SearchReadsRequest #

Creates a value of SearchReadsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srrStart :: Lens' SearchReadsRequest (Maybe Int64) #

The start position of the range on the reference, 0-based inclusive. If specified, `referenceName` must also be specified.

srrReadGroupIds :: Lens' SearchReadsRequest [Text] #

The IDs of the read groups within which to search for reads. All specified read groups must belong to the same read group sets. Must specify one of `readGroupSetIds` or `readGroupIds`.

srrReferenceName :: Lens' SearchReadsRequest (Maybe Text) #

The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to `*`, only unmapped reads are returned. If unspecified, all reads (mapped and unmapped) are returned.

srrEnd :: Lens' SearchReadsRequest (Maybe Int64) #

The end position of the range on the reference, 0-based exclusive. If specified, `referenceName` must also be specified.

srrPageToken :: Lens' SearchReadsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

srrPageSize :: Lens' SearchReadsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 2048.

srrReadGroupSetIds :: Lens' SearchReadsRequest [Text] #

The IDs of the read groups sets within which to search for reads. All specified read group sets must be aligned against a common set of reference sequences; this defines the genomic coordinates for the query. Must specify one of `readGroupSetIds` or `readGroupIds`.

OperationMetadataRequest

data OperationMetadataRequest #

The original request that started the operation. Note that this will be in current version of the API. If the operation was started with v1beta2 API and a GetOperation is performed on v1 API, a v1 request will be returned.

See: operationMetadataRequest smart constructor.

Instances

Eq OperationMetadataRequest #
Methods (==) :: OperationMetadataRequest -> OperationMetadataRequest -> Bool # (/=) :: OperationMetadataRequest -> OperationMetadataRequest -> Bool #
Data OperationMetadataRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataRequest -> c OperationMetadataRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataRequest # toConstr :: OperationMetadataRequest -> Constr # dataTypeOf :: OperationMetadataRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataRequest) # gmapT :: (forall b. Data b => b -> b) -> OperationMetadataRequest -> OperationMetadataRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRequest -> m OperationMetadataRequest #
Show OperationMetadataRequest #
Methods showsPrec :: Int -> OperationMetadataRequest -> ShowS # show :: OperationMetadataRequest -> String # showList :: [OperationMetadataRequest] -> ShowS #
Generic OperationMetadataRequest #
Associated Types type Rep OperationMetadataRequest :: * -> * # Methods from :: OperationMetadataRequest -> Rep OperationMetadataRequest x # to :: Rep OperationMetadataRequest x -> OperationMetadataRequest #
ToJSON OperationMetadataRequest #
Methods toJSON :: OperationMetadataRequest -> Value # toEncoding :: OperationMetadataRequest -> Encoding # toJSONList :: [OperationMetadataRequest] -> Value # toEncodingList :: [OperationMetadataRequest] -> Encoding #
FromJSON OperationMetadataRequest #
Methods parseJSON :: Value -> Parser OperationMetadataRequest # parseJSONList :: Value -> Parser [OperationMetadataRequest] #
type Rep OperationMetadataRequest #
type Rep OperationMetadataRequest = D1 (MetaData "OperationMetadataRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "OperationMetadataRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_omrAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationMetadataRequest #

Arguments

:: HashMap Text JSONValue	`omrAddtional`
-> OperationMetadataRequest

Creates a value of OperationMetadataRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

omrAddtional

omrAddtional :: Lens' OperationMetadataRequest (HashMap Text JSONValue) #

Properties of the object. Contains field 'type with type URL.

MergeVariantsRequestInfoMergeConfig

data MergeVariantsRequestInfoMergeConfig #

A mapping between info field keys and the InfoMergeOperations to be performed on them.

See: mergeVariantsRequestInfoMergeConfig smart constructor.

Instances

Eq MergeVariantsRequestInfoMergeConfig #
Methods (==) :: MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig -> Bool # (/=) :: MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig -> Bool #
Data MergeVariantsRequestInfoMergeConfig #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> MergeVariantsRequestInfoMergeConfig -> c MergeVariantsRequestInfoMergeConfig # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c MergeVariantsRequestInfoMergeConfig # toConstr :: MergeVariantsRequestInfoMergeConfig -> Constr # dataTypeOf :: MergeVariantsRequestInfoMergeConfig -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c MergeVariantsRequestInfoMergeConfig) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c MergeVariantsRequestInfoMergeConfig) # gmapT :: (forall b. Data b => b -> b) -> MergeVariantsRequestInfoMergeConfig -> MergeVariantsRequestInfoMergeConfig # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequestInfoMergeConfig -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> MergeVariantsRequestInfoMergeConfig -> r # gmapQ :: (forall d. Data d => d -> u) -> MergeVariantsRequestInfoMergeConfig -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> MergeVariantsRequestInfoMergeConfig -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> MergeVariantsRequestInfoMergeConfig -> m MergeVariantsRequestInfoMergeConfig #
Show MergeVariantsRequestInfoMergeConfig #
Methods showsPrec :: Int -> MergeVariantsRequestInfoMergeConfig -> ShowS # show :: MergeVariantsRequestInfoMergeConfig -> String # showList :: [MergeVariantsRequestInfoMergeConfig] -> ShowS #
Generic MergeVariantsRequestInfoMergeConfig #
Associated Types type Rep MergeVariantsRequestInfoMergeConfig :: * -> * # Methods from :: MergeVariantsRequestInfoMergeConfig -> Rep MergeVariantsRequestInfoMergeConfig x # to :: Rep MergeVariantsRequestInfoMergeConfig x -> MergeVariantsRequestInfoMergeConfig #
ToJSON MergeVariantsRequestInfoMergeConfig #
Methods toJSON :: MergeVariantsRequestInfoMergeConfig -> Value # toEncoding :: MergeVariantsRequestInfoMergeConfig -> Encoding # toJSONList :: [MergeVariantsRequestInfoMergeConfig] -> Value # toEncodingList :: [MergeVariantsRequestInfoMergeConfig] -> Encoding #
FromJSON MergeVariantsRequestInfoMergeConfig #
Methods parseJSON :: Value -> Parser MergeVariantsRequestInfoMergeConfig # parseJSONList :: Value -> Parser [MergeVariantsRequestInfoMergeConfig] #
type Rep MergeVariantsRequestInfoMergeConfig #
type Rep MergeVariantsRequestInfoMergeConfig = D1 (MetaData "MergeVariantsRequestInfoMergeConfig" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "MergeVariantsRequestInfoMergeConfig'" PrefixI True) (S1 (MetaSel (Just Symbol "_mvrimcAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text Text))))

mergeVariantsRequestInfoMergeConfig #

Arguments

:: HashMap Text Text	`mvrimcAddtional`
-> MergeVariantsRequestInfoMergeConfig

Creates a value of MergeVariantsRequestInfoMergeConfig with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

mvrimcAddtional

mvrimcAddtional :: Lens' MergeVariantsRequestInfoMergeConfig (HashMap Text Text) #

VariantInfo

data VariantInfo #

A map of additional variant information. This must be of the form map (string key mapping to a list of string values).

See: variantInfo smart constructor.

Instances

Eq VariantInfo #
Methods (==) :: VariantInfo -> VariantInfo -> Bool # (/=) :: VariantInfo -> VariantInfo -> Bool #
Data VariantInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantInfo -> c VariantInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantInfo # toConstr :: VariantInfo -> Constr # dataTypeOf :: VariantInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantInfo) # gmapT :: (forall b. Data b => b -> b) -> VariantInfo -> VariantInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantInfo -> m VariantInfo #
Show VariantInfo #
Methods showsPrec :: Int -> VariantInfo -> ShowS # show :: VariantInfo -> String # showList :: [VariantInfo] -> ShowS #
Generic VariantInfo #
Associated Types type Rep VariantInfo :: * -> * # Methods from :: VariantInfo -> Rep VariantInfo x # to :: Rep VariantInfo x -> VariantInfo #
ToJSON VariantInfo #
Methods toJSON :: VariantInfo -> Value # toEncoding :: VariantInfo -> Encoding # toJSONList :: [VariantInfo] -> Value # toEncodingList :: [VariantInfo] -> Encoding #
FromJSON VariantInfo #
Methods parseJSON :: Value -> Parser VariantInfo # parseJSONList :: Value -> Parser [VariantInfo] #
type Rep VariantInfo #
type Rep VariantInfo = D1 (MetaData "VariantInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "VariantInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_viAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantInfo #

Arguments

:: HashMap Text [JSONValue]	`viAddtional`
-> VariantInfo

Creates a value of VariantInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

viAddtional

viAddtional :: Lens' VariantInfo (HashMap Text [JSONValue]) #

Experiment

data Experiment #

Instances

Eq Experiment #
Methods (==) :: Experiment -> Experiment -> Bool # (/=) :: Experiment -> Experiment -> Bool #
Data Experiment #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Experiment -> c Experiment # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Experiment # toConstr :: Experiment -> Constr # dataTypeOf :: Experiment -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Experiment) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Experiment) # gmapT :: (forall b. Data b => b -> b) -> Experiment -> Experiment # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Experiment -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Experiment -> r # gmapQ :: (forall d. Data d => d -> u) -> Experiment -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Experiment -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Experiment -> m Experiment #
Show Experiment #
Methods showsPrec :: Int -> Experiment -> ShowS # show :: Experiment -> String # showList :: [Experiment] -> ShowS #
Generic Experiment #
Associated Types type Rep Experiment :: * -> * # Methods from :: Experiment -> Rep Experiment x # to :: Rep Experiment x -> Experiment #
ToJSON Experiment #
Methods toJSON :: Experiment -> Value # toEncoding :: Experiment -> Encoding # toJSONList :: [Experiment] -> Value # toEncodingList :: [Experiment] -> Encoding #
FromJSON Experiment #
Methods parseJSON :: Value -> Parser Experiment # parseJSONList :: Value -> Parser [Experiment] #
type Rep Experiment #
type Rep Experiment = D1 (MetaData "Experiment" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Experiment'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_eInstrumentModel") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ePlatformUnit") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_eSequencingCenter") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_eLibraryId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

experiment :: Experiment #

Creates a value of Experiment with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

eInstrumentModel :: Lens' Experiment (Maybe Text) #

The instrument model used as part of this experiment. This maps to sequencing technology in the SAM spec.

ePlatformUnit :: Lens' Experiment (Maybe Text) #

The platform unit used as part of this experiment, for example flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the 'RG PU field in the SAM spec.

eSequencingCenter :: Lens' Experiment (Maybe Text) #

The sequencing center used as part of this experiment.

eLibraryId :: Lens' Experiment (Maybe Text) #

A client-supplied library identifier; a library is a collection of DNA fragments which have been prepared for sequencing from a sample. This field is important for quality control as error or bias can be introduced during sample preparation.

SearchVariantSetsRequest

data SearchVariantSetsRequest #

The search variant sets request.

See: searchVariantSetsRequest smart constructor.

Instances

Eq SearchVariantSetsRequest #
Methods (==) :: SearchVariantSetsRequest -> SearchVariantSetsRequest -> Bool # (/=) :: SearchVariantSetsRequest -> SearchVariantSetsRequest -> Bool #
Data SearchVariantSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantSetsRequest -> c SearchVariantSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantSetsRequest # toConstr :: SearchVariantSetsRequest -> Constr # dataTypeOf :: SearchVariantSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchVariantSetsRequest -> SearchVariantSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchVariantSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsRequest -> m SearchVariantSetsRequest #
Show SearchVariantSetsRequest #
Methods showsPrec :: Int -> SearchVariantSetsRequest -> ShowS # show :: SearchVariantSetsRequest -> String # showList :: [SearchVariantSetsRequest] -> ShowS #
Generic SearchVariantSetsRequest #
Associated Types type Rep SearchVariantSetsRequest :: * -> * # Methods from :: SearchVariantSetsRequest -> Rep SearchVariantSetsRequest x # to :: Rep SearchVariantSetsRequest x -> SearchVariantSetsRequest #
ToJSON SearchVariantSetsRequest #
Methods toJSON :: SearchVariantSetsRequest -> Value # toEncoding :: SearchVariantSetsRequest -> Encoding # toJSONList :: [SearchVariantSetsRequest] -> Value # toEncodingList :: [SearchVariantSetsRequest] -> Encoding #
FromJSON SearchVariantSetsRequest #
Methods parseJSON :: Value -> Parser SearchVariantSetsRequest # parseJSONList :: Value -> Parser [SearchVariantSetsRequest] #
type Rep SearchVariantSetsRequest #
type Rep SearchVariantSetsRequest = D1 (MetaData "SearchVariantSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchVariantSetsRequest'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_svsrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((::) (S1 (MetaSel (Just Symbol "_svsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchVariantSetsRequest :: SearchVariantSetsRequest #

Creates a value of SearchVariantSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

svsrDataSetIds :: Lens' SearchVariantSetsRequest [Text] #

Exactly one dataset ID must be provided here. Only variant sets which belong to this dataset will be returned.

svsrPageToken :: Lens' SearchVariantSetsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

svsrPageSize :: Lens' SearchVariantSetsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 1024.

AnnotationInfo

data AnnotationInfo #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: annotationInfo smart constructor.

Instances

Eq AnnotationInfo #
Methods (==) :: AnnotationInfo -> AnnotationInfo -> Bool # (/=) :: AnnotationInfo -> AnnotationInfo -> Bool #
Data AnnotationInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationInfo -> c AnnotationInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationInfo # toConstr :: AnnotationInfo -> Constr # dataTypeOf :: AnnotationInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationInfo) # gmapT :: (forall b. Data b => b -> b) -> AnnotationInfo -> AnnotationInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> AnnotationInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationInfo -> m AnnotationInfo #
Show AnnotationInfo #
Methods showsPrec :: Int -> AnnotationInfo -> ShowS # show :: AnnotationInfo -> String # showList :: [AnnotationInfo] -> ShowS #
Generic AnnotationInfo #
Associated Types type Rep AnnotationInfo :: * -> * # Methods from :: AnnotationInfo -> Rep AnnotationInfo x # to :: Rep AnnotationInfo x -> AnnotationInfo #
ToJSON AnnotationInfo #
Methods toJSON :: AnnotationInfo -> Value # toEncoding :: AnnotationInfo -> Encoding # toJSONList :: [AnnotationInfo] -> Value # toEncodingList :: [AnnotationInfo] -> Encoding #
FromJSON AnnotationInfo #
Methods parseJSON :: Value -> Parser AnnotationInfo # parseJSONList :: Value -> Parser [AnnotationInfo] #
type Rep AnnotationInfo #
type Rep AnnotationInfo = D1 (MetaData "AnnotationInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "AnnotationInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_aiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

annotationInfo #

Arguments

:: HashMap Text [JSONValue]	`aiAddtional`
-> AnnotationInfo

Creates a value of AnnotationInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

aiAddtional

aiAddtional :: Lens' AnnotationInfo (HashMap Text [JSONValue]) #

SearchAnnotationsResponse

data SearchAnnotationsResponse #

Instances

Eq SearchAnnotationsResponse #
Methods (==) :: SearchAnnotationsResponse -> SearchAnnotationsResponse -> Bool # (/=) :: SearchAnnotationsResponse -> SearchAnnotationsResponse -> Bool #
Data SearchAnnotationsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationsResponse -> c SearchAnnotationsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationsResponse # toConstr :: SearchAnnotationsResponse -> Constr # dataTypeOf :: SearchAnnotationsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationsResponse -> SearchAnnotationsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsResponse -> m SearchAnnotationsResponse #
Show SearchAnnotationsResponse #
Methods showsPrec :: Int -> SearchAnnotationsResponse -> ShowS # show :: SearchAnnotationsResponse -> String # showList :: [SearchAnnotationsResponse] -> ShowS #
Generic SearchAnnotationsResponse #
Associated Types type Rep SearchAnnotationsResponse :: * -> * # Methods from :: SearchAnnotationsResponse -> Rep SearchAnnotationsResponse x # to :: Rep SearchAnnotationsResponse x -> SearchAnnotationsResponse #
ToJSON SearchAnnotationsResponse #
Methods toJSON :: SearchAnnotationsResponse -> Value # toEncoding :: SearchAnnotationsResponse -> Encoding # toJSONList :: [SearchAnnotationsResponse] -> Value # toEncodingList :: [SearchAnnotationsResponse] -> Encoding #
FromJSON SearchAnnotationsResponse #
Methods parseJSON :: Value -> Parser SearchAnnotationsResponse # parseJSONList :: Value -> Parser [SearchAnnotationsResponse] #
type Rep SearchAnnotationsResponse #
type Rep SearchAnnotationsResponse = D1 (MetaData "SearchAnnotationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchAnnotationsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sarAnnotations") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Annotation]))) (S1 (MetaSel (Just Symbol "_sarNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

searchAnnotationsResponse :: SearchAnnotationsResponse #

Creates a value of SearchAnnotationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sarAnnotations :: Lens' SearchAnnotationsResponse [Annotation] #

The matching annotations.

sarNextPageToken :: Lens' SearchAnnotationsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

SearchAnnotationSetsRequest

data SearchAnnotationSetsRequest #

Instances

Eq SearchAnnotationSetsRequest #
Methods (==) :: SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest -> Bool # (/=) :: SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest -> Bool #
Data SearchAnnotationSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationSetsRequest -> c SearchAnnotationSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationSetsRequest # toConstr :: SearchAnnotationSetsRequest -> Constr # dataTypeOf :: SearchAnnotationSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationSetsRequest -> SearchAnnotationSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsRequest -> m SearchAnnotationSetsRequest #
Show SearchAnnotationSetsRequest #
Methods showsPrec :: Int -> SearchAnnotationSetsRequest -> ShowS # show :: SearchAnnotationSetsRequest -> String # showList :: [SearchAnnotationSetsRequest] -> ShowS #
Generic SearchAnnotationSetsRequest #
Associated Types type Rep SearchAnnotationSetsRequest :: * -> * # Methods from :: SearchAnnotationSetsRequest -> Rep SearchAnnotationSetsRequest x # to :: Rep SearchAnnotationSetsRequest x -> SearchAnnotationSetsRequest #
ToJSON SearchAnnotationSetsRequest #
Methods toJSON :: SearchAnnotationSetsRequest -> Value # toEncoding :: SearchAnnotationSetsRequest -> Encoding # toJSONList :: [SearchAnnotationSetsRequest] -> Value # toEncodingList :: [SearchAnnotationSetsRequest] -> Encoding #
FromJSON SearchAnnotationSetsRequest #
Methods parseJSON :: Value -> Parser SearchAnnotationSetsRequest # parseJSONList :: Value -> Parser [SearchAnnotationSetsRequest] #
type Rep SearchAnnotationSetsRequest #
type Rep SearchAnnotationSetsRequest = D1 (MetaData "SearchAnnotationSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchAnnotationSetsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_sasrReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_sasrTypes") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_sasrDataSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))))) ((::) (S1 (MetaSel (Just Symbol "_sasrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((:*:) (S1 (MetaSel (Just Symbol "_sasrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sasrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchAnnotationSetsRequest :: SearchAnnotationSetsRequest #

Creates a value of SearchAnnotationSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sasrReferenceSetId :: Lens' SearchAnnotationSetsRequest (Maybe Text) #

If specified, only annotation sets associated with the given reference set are returned.

sasrTypes :: Lens' SearchAnnotationSetsRequest [Text] #

If specified, only annotation sets that have any of these types are returned.

sasrDataSetIds :: Lens' SearchAnnotationSetsRequest [Text] #

Required. The dataset IDs to search within. Caller must have `READ` access to these datasets.

sasrName :: Lens' SearchAnnotationSetsRequest (Maybe Text) #

Only return annotations sets for which a substring of the name matches this string (case insensitive).

sasrPageToken :: Lens' SearchAnnotationSetsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sasrPageSize :: Lens' SearchAnnotationSetsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 128. The maximum value is 1024.

ImportReadGroupSetsRequestPartitionStrategy

data ImportReadGroupSetsRequestPartitionStrategy #

The partition strategy describes how read groups are partitioned into read group sets.

Constructors

PartitionStrategyUnspecified	PARTITION_STRATEGY_UNSPECIFIED
PerFilePerSample	`PER_FILE_PER_SAMPLE` In most cases, this strategy yields one read group set per file. This is the default behavior. Allocate one read group set per file per sample. For BAM files, read groups are considered to share a sample if they have identical sample names. Furthermore, all reads for each file which do not belong to a read group, if any, will be grouped into a single read group set per-file.
MergeAll	`MERGE_ALL` Includes all read groups in all imported files into a single read group set. Requires that the headers for all imported files are equivalent. All reads which do not belong to a read group, if any, will be grouped into a separate read group set.

Instances

Enum ImportReadGroupSetsRequestPartitionStrategy #
Methods succ :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy # pred :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy # toEnum :: Int -> ImportReadGroupSetsRequestPartitionStrategy # fromEnum :: ImportReadGroupSetsRequestPartitionStrategy -> Int # enumFrom :: ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy] # enumFromThen :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy] # enumFromTo :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy] # enumFromThenTo :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> [ImportReadGroupSetsRequestPartitionStrategy] #
Eq ImportReadGroupSetsRequestPartitionStrategy #
Methods (==) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool # (/=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool #
Data ImportReadGroupSetsRequestPartitionStrategy #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsRequestPartitionStrategy -> c ImportReadGroupSetsRequestPartitionStrategy # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsRequestPartitionStrategy # toConstr :: ImportReadGroupSetsRequestPartitionStrategy -> Constr # dataTypeOf :: ImportReadGroupSetsRequestPartitionStrategy -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsRequestPartitionStrategy) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsRequestPartitionStrategy) # gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequestPartitionStrategy -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequestPartitionStrategy -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsRequestPartitionStrategy -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsRequestPartitionStrategy -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequestPartitionStrategy -> m ImportReadGroupSetsRequestPartitionStrategy #
Ord ImportReadGroupSetsRequestPartitionStrategy #
Methods compare :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Ordering # (<) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool # (<=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool # (>) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool # (>=) :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> Bool # max :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy # min :: ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy -> ImportReadGroupSetsRequestPartitionStrategy #
Read ImportReadGroupSetsRequestPartitionStrategy #
Methods readsPrec :: Int -> ReadS ImportReadGroupSetsRequestPartitionStrategy # readList :: ReadS [ImportReadGroupSetsRequestPartitionStrategy] # readPrec :: ReadPrec ImportReadGroupSetsRequestPartitionStrategy # readListPrec :: ReadPrec [ImportReadGroupSetsRequestPartitionStrategy] #
Show ImportReadGroupSetsRequestPartitionStrategy #
Methods showsPrec :: Int -> ImportReadGroupSetsRequestPartitionStrategy -> ShowS # show :: ImportReadGroupSetsRequestPartitionStrategy -> String # showList :: [ImportReadGroupSetsRequestPartitionStrategy] -> ShowS #
Generic ImportReadGroupSetsRequestPartitionStrategy #
Associated Types type Rep ImportReadGroupSetsRequestPartitionStrategy :: * -> * # Methods from :: ImportReadGroupSetsRequestPartitionStrategy -> Rep ImportReadGroupSetsRequestPartitionStrategy x # to :: Rep ImportReadGroupSetsRequestPartitionStrategy x -> ImportReadGroupSetsRequestPartitionStrategy #
Hashable ImportReadGroupSetsRequestPartitionStrategy #
Methods hashWithSalt :: Int -> ImportReadGroupSetsRequestPartitionStrategy -> Int # hash :: ImportReadGroupSetsRequestPartitionStrategy -> Int #
ToJSON ImportReadGroupSetsRequestPartitionStrategy #
Methods toJSON :: ImportReadGroupSetsRequestPartitionStrategy -> Value # toEncoding :: ImportReadGroupSetsRequestPartitionStrategy -> Encoding # toJSONList :: [ImportReadGroupSetsRequestPartitionStrategy] -> Value # toEncodingList :: [ImportReadGroupSetsRequestPartitionStrategy] -> Encoding #
FromJSON ImportReadGroupSetsRequestPartitionStrategy #
Methods parseJSON :: Value -> Parser ImportReadGroupSetsRequestPartitionStrategy # parseJSONList :: Value -> Parser [ImportReadGroupSetsRequestPartitionStrategy] #
FromHttpApiData ImportReadGroupSetsRequestPartitionStrategy #
Methods parseUrlPiece :: Text -> Either Text ImportReadGroupSetsRequestPartitionStrategy # parseHeader :: ByteString -> Either Text ImportReadGroupSetsRequestPartitionStrategy # parseQueryParam :: Text -> Either Text ImportReadGroupSetsRequestPartitionStrategy #
ToHttpApiData ImportReadGroupSetsRequestPartitionStrategy #
Methods toUrlPiece :: ImportReadGroupSetsRequestPartitionStrategy -> Text # toEncodedUrlPiece :: ImportReadGroupSetsRequestPartitionStrategy -> Builder # toHeader :: ImportReadGroupSetsRequestPartitionStrategy -> ByteString # toQueryParam :: ImportReadGroupSetsRequestPartitionStrategy -> Text #
type Rep ImportReadGroupSetsRequestPartitionStrategy #
type Rep ImportReadGroupSetsRequestPartitionStrategy = D1 (MetaData "ImportReadGroupSetsRequestPartitionStrategy" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) (C1 (MetaCons "PartitionStrategyUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "PerFilePerSample" PrefixI False) U1) (C1 (MetaCons "MergeAll" PrefixI False) U1)))

SearchVariantsResponse

data SearchVariantsResponse #

The variant search response.

See: searchVariantsResponse smart constructor.

Instances

Eq SearchVariantsResponse #
Methods (==) :: SearchVariantsResponse -> SearchVariantsResponse -> Bool # (/=) :: SearchVariantsResponse -> SearchVariantsResponse -> Bool #
Data SearchVariantsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantsResponse -> c SearchVariantsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantsResponse # toConstr :: SearchVariantsResponse -> Constr # dataTypeOf :: SearchVariantsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchVariantsResponse -> SearchVariantsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchVariantsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsResponse -> m SearchVariantsResponse #
Show SearchVariantsResponse #
Methods showsPrec :: Int -> SearchVariantsResponse -> ShowS # show :: SearchVariantsResponse -> String # showList :: [SearchVariantsResponse] -> ShowS #
Generic SearchVariantsResponse #
Associated Types type Rep SearchVariantsResponse :: * -> * # Methods from :: SearchVariantsResponse -> Rep SearchVariantsResponse x # to :: Rep SearchVariantsResponse x -> SearchVariantsResponse #
ToJSON SearchVariantsResponse #
Methods toJSON :: SearchVariantsResponse -> Value # toEncoding :: SearchVariantsResponse -> Encoding # toJSONList :: [SearchVariantsResponse] -> Value # toEncodingList :: [SearchVariantsResponse] -> Encoding #
FromJSON SearchVariantsResponse #
Methods parseJSON :: Value -> Parser SearchVariantsResponse # parseJSONList :: Value -> Parser [SearchVariantsResponse] #
type Rep SearchVariantsResponse #
type Rep SearchVariantsResponse = D1 (MetaData "SearchVariantsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchVariantsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_svrVariants") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Variant]))) (S1 (MetaSel (Just Symbol "_svrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

searchVariantsResponse :: SearchVariantsResponse #

Creates a value of SearchVariantsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

svrVariants
svrNextPageToken

svrVariants :: Lens' SearchVariantsResponse [Variant] #

The list of matching Variants.

svrNextPageToken :: Lens' SearchVariantsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

OperationMetadataRuntimeMetadata

data OperationMetadataRuntimeMetadata #

Runtime metadata on this Operation.

See: operationMetadataRuntimeMetadata smart constructor.

Instances

Eq OperationMetadataRuntimeMetadata #
Methods (==) :: OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata -> Bool # (/=) :: OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata -> Bool #
Data OperationMetadataRuntimeMetadata #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadataRuntimeMetadata -> c OperationMetadataRuntimeMetadata # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadataRuntimeMetadata # toConstr :: OperationMetadataRuntimeMetadata -> Constr # dataTypeOf :: OperationMetadataRuntimeMetadata -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadataRuntimeMetadata) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadataRuntimeMetadata) # gmapT :: (forall b. Data b => b -> b) -> OperationMetadataRuntimeMetadata -> OperationMetadataRuntimeMetadata # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRuntimeMetadata -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadataRuntimeMetadata -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationMetadataRuntimeMetadata -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadataRuntimeMetadata -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadataRuntimeMetadata -> m OperationMetadataRuntimeMetadata #
Show OperationMetadataRuntimeMetadata #
Methods showsPrec :: Int -> OperationMetadataRuntimeMetadata -> ShowS # show :: OperationMetadataRuntimeMetadata -> String # showList :: [OperationMetadataRuntimeMetadata] -> ShowS #
Generic OperationMetadataRuntimeMetadata #
Associated Types type Rep OperationMetadataRuntimeMetadata :: * -> * # Methods from :: OperationMetadataRuntimeMetadata -> Rep OperationMetadataRuntimeMetadata x # to :: Rep OperationMetadataRuntimeMetadata x -> OperationMetadataRuntimeMetadata #
ToJSON OperationMetadataRuntimeMetadata #
Methods toJSON :: OperationMetadataRuntimeMetadata -> Value # toEncoding :: OperationMetadataRuntimeMetadata -> Encoding # toJSONList :: [OperationMetadataRuntimeMetadata] -> Value # toEncodingList :: [OperationMetadataRuntimeMetadata] -> Encoding #
FromJSON OperationMetadataRuntimeMetadata #
Methods parseJSON :: Value -> Parser OperationMetadataRuntimeMetadata # parseJSONList :: Value -> Parser [OperationMetadataRuntimeMetadata] #
type Rep OperationMetadataRuntimeMetadata #
type Rep OperationMetadataRuntimeMetadata = D1 (MetaData "OperationMetadataRuntimeMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "OperationMetadataRuntimeMetadata'" PrefixI True) (S1 (MetaSel (Just Symbol "_omrmAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationMetadataRuntimeMetadata #

Arguments

:: HashMap Text JSONValue	`omrmAddtional`
-> OperationMetadataRuntimeMetadata

Creates a value of OperationMetadataRuntimeMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

omrmAddtional

omrmAddtional :: Lens' OperationMetadataRuntimeMetadata (HashMap Text JSONValue) #

Properties of the object. Contains field 'type with type URL.

ClinicalCondition

data ClinicalCondition #

Instances

Eq ClinicalCondition #
Methods (==) :: ClinicalCondition -> ClinicalCondition -> Bool # (/=) :: ClinicalCondition -> ClinicalCondition -> Bool #
Data ClinicalCondition #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ClinicalCondition -> c ClinicalCondition # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ClinicalCondition # toConstr :: ClinicalCondition -> Constr # dataTypeOf :: ClinicalCondition -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ClinicalCondition) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ClinicalCondition) # gmapT :: (forall b. Data b => b -> b) -> ClinicalCondition -> ClinicalCondition # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ClinicalCondition -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ClinicalCondition -> r # gmapQ :: (forall d. Data d => d -> u) -> ClinicalCondition -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ClinicalCondition -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ClinicalCondition -> m ClinicalCondition #
Show ClinicalCondition #
Methods showsPrec :: Int -> ClinicalCondition -> ShowS # show :: ClinicalCondition -> String # showList :: [ClinicalCondition] -> ShowS #
Generic ClinicalCondition #
Associated Types type Rep ClinicalCondition :: * -> * # Methods from :: ClinicalCondition -> Rep ClinicalCondition x # to :: Rep ClinicalCondition x -> ClinicalCondition #
ToJSON ClinicalCondition #
Methods toJSON :: ClinicalCondition -> Value # toEncoding :: ClinicalCondition -> Encoding # toJSONList :: [ClinicalCondition] -> Value # toEncodingList :: [ClinicalCondition] -> Encoding #
FromJSON ClinicalCondition #
Methods parseJSON :: Value -> Parser ClinicalCondition # parseJSONList :: Value -> Parser [ClinicalCondition] #
type Rep ClinicalCondition #
type Rep ClinicalCondition = D1 (MetaData "ClinicalCondition" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ClinicalCondition'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_ccExternalIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ExternalId]))) (S1 (MetaSel (Just Symbol "_ccNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_ccConceptId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ccOmimId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

clinicalCondition :: ClinicalCondition #

Creates a value of ClinicalCondition with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ccExternalIds :: Lens' ClinicalCondition [ExternalId] #

The set of external IDs for this condition.

ccNames :: Lens' ClinicalCondition [Text] #

A set of names for the condition.

ccConceptId :: Lens' ClinicalCondition (Maybe Text) #

The MedGen concept id associated with this gene. Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/

ccOmimId :: Lens' ClinicalCondition (Maybe Text) #

The OMIM id for this condition. Search for these IDs at http://omim.org/

SearchCallSetsRequest

data SearchCallSetsRequest #

The call set search request.

See: searchCallSetsRequest smart constructor.

Instances

Eq SearchCallSetsRequest #
Methods (==) :: SearchCallSetsRequest -> SearchCallSetsRequest -> Bool # (/=) :: SearchCallSetsRequest -> SearchCallSetsRequest -> Bool #
Data SearchCallSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchCallSetsRequest -> c SearchCallSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchCallSetsRequest # toConstr :: SearchCallSetsRequest -> Constr # dataTypeOf :: SearchCallSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchCallSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchCallSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchCallSetsRequest -> SearchCallSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchCallSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchCallSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchCallSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchCallSetsRequest -> m SearchCallSetsRequest #
Show SearchCallSetsRequest #
Methods showsPrec :: Int -> SearchCallSetsRequest -> ShowS # show :: SearchCallSetsRequest -> String # showList :: [SearchCallSetsRequest] -> ShowS #
Generic SearchCallSetsRequest #
Associated Types type Rep SearchCallSetsRequest :: * -> * # Methods from :: SearchCallSetsRequest -> Rep SearchCallSetsRequest x # to :: Rep SearchCallSetsRequest x -> SearchCallSetsRequest #
ToJSON SearchCallSetsRequest #
Methods toJSON :: SearchCallSetsRequest -> Value # toEncoding :: SearchCallSetsRequest -> Encoding # toJSONList :: [SearchCallSetsRequest] -> Value # toEncodingList :: [SearchCallSetsRequest] -> Encoding #
FromJSON SearchCallSetsRequest #
Methods parseJSON :: Value -> Parser SearchCallSetsRequest # parseJSONList :: Value -> Parser [SearchCallSetsRequest] #
type Rep SearchCallSetsRequest #
type Rep SearchCallSetsRequest = D1 (MetaData "SearchCallSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchCallSetsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_scsrName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_scsrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_scsrVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_scsrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))

searchCallSetsRequest :: SearchCallSetsRequest #

Creates a value of SearchCallSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

scsrName :: Lens' SearchCallSetsRequest (Maybe Text) #

Only return call sets for which a substring of the name matches this string.

scsrPageToken :: Lens' SearchCallSetsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

scsrVariantSetIds :: Lens' SearchCallSetsRequest [Text] #

Restrict the query to call sets within the given variant sets. At least one ID must be provided.

scsrPageSize :: Lens' SearchCallSetsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 1024.

Entry

data Entry #

Instances

Eq Entry #
Methods (==) :: Entry -> Entry -> Bool # (/=) :: Entry -> Entry -> Bool #
Data Entry #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Entry -> c Entry # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Entry # toConstr :: Entry -> Constr # dataTypeOf :: Entry -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Entry) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Entry) # gmapT :: (forall b. Data b => b -> b) -> Entry -> Entry # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Entry -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Entry -> r # gmapQ :: (forall d. Data d => d -> u) -> Entry -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Entry -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Entry -> m Entry # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Entry -> m Entry # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Entry -> m Entry #
Show Entry #
Methods showsPrec :: Int -> Entry -> ShowS # show :: Entry -> String # showList :: [Entry] -> ShowS #
Generic Entry #
Associated Types type Rep Entry :: * -> * # Methods from :: Entry -> Rep Entry x # to :: Rep Entry x -> Entry #
ToJSON Entry #
Methods toJSON :: Entry -> Value # toEncoding :: Entry -> Encoding # toJSONList :: [Entry] -> Value # toEncodingList :: [Entry] -> Encoding #
FromJSON Entry #
Methods parseJSON :: Value -> Parser Entry # parseJSONList :: Value -> Parser [Entry] #
type Rep Entry #
type Rep Entry = D1 (MetaData "Entry" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Entry'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_eStatus") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Status))) (S1 (MetaSel (Just Symbol "_eAnnotation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Annotation)))))

entry :: Entry #

Creates a value of Entry with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

eStatus
eAnnotation

eStatus :: Lens' Entry (Maybe Status) #

The creation status.

eAnnotation :: Lens' Entry (Maybe Annotation) #

The created annotation, if creation was successful.

SearchReadsResponse

data SearchReadsResponse #

The read search response.

See: searchReadsResponse smart constructor.

Instances

Eq SearchReadsResponse #
Methods (==) :: SearchReadsResponse -> SearchReadsResponse -> Bool # (/=) :: SearchReadsResponse -> SearchReadsResponse -> Bool #
Data SearchReadsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadsResponse -> c SearchReadsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadsResponse # toConstr :: SearchReadsResponse -> Constr # dataTypeOf :: SearchReadsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchReadsResponse -> SearchReadsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReadsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadsResponse -> m SearchReadsResponse #
Show SearchReadsResponse #
Methods showsPrec :: Int -> SearchReadsResponse -> ShowS # show :: SearchReadsResponse -> String # showList :: [SearchReadsResponse] -> ShowS #
Generic SearchReadsResponse #
Associated Types type Rep SearchReadsResponse :: * -> * # Methods from :: SearchReadsResponse -> Rep SearchReadsResponse x # to :: Rep SearchReadsResponse x -> SearchReadsResponse #
ToJSON SearchReadsResponse #
Methods toJSON :: SearchReadsResponse -> Value # toEncoding :: SearchReadsResponse -> Encoding # toJSONList :: [SearchReadsResponse] -> Value # toEncodingList :: [SearchReadsResponse] -> Encoding #
FromJSON SearchReadsResponse #
Methods parseJSON :: Value -> Parser SearchReadsResponse # parseJSONList :: Value -> Parser [SearchReadsResponse] #
type Rep SearchReadsResponse #
type Rep SearchReadsResponse = D1 (MetaData "SearchReadsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReadsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sAlignments") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Read'])))))

searchReadsResponse :: SearchReadsResponse #

Creates a value of SearchReadsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sNextPageToken
sAlignments

sNextPageToken :: Lens' SearchReadsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

sAlignments :: Lens' SearchReadsResponse [Read'] #

The list of matching alignments sorted by mapped genomic coordinate, if any, ascending in position within the same reference. Unmapped reads, which have no position, are returned contiguously and are sorted in ascending lexicographic order by fragment name.

Program

data Program #

Instances

Eq Program #
Methods (==) :: Program -> Program -> Bool # (/=) :: Program -> Program -> Bool #
Data Program #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Program -> c Program # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Program # toConstr :: Program -> Constr # dataTypeOf :: Program -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Program) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Program) # gmapT :: (forall b. Data b => b -> b) -> Program -> Program # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Program -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Program -> r # gmapQ :: (forall d. Data d => d -> u) -> Program -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Program -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Program -> m Program # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Program -> m Program # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Program -> m Program #
Show Program #
Methods showsPrec :: Int -> Program -> ShowS # show :: Program -> String # showList :: [Program] -> ShowS #
Generic Program #
Associated Types type Rep Program :: * -> * # Methods from :: Program -> Rep Program x # to :: Rep Program x -> Program #
ToJSON Program #
Methods toJSON :: Program -> Value # toEncoding :: Program -> Encoding # toJSONList :: [Program] -> Value # toEncodingList :: [Program] -> Encoding #
FromJSON Program #
Methods parseJSON :: Value -> Parser Program # parseJSONList :: Value -> Parser [Program] #
type Rep Program #
type Rep Program = D1 (MetaData "Program" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Program'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_pPrevProgramId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_pVersion") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_pId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pCommandLine") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

program :: Program #

Creates a value of Program with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

pPrevProgramId :: Lens' Program (Maybe Text) #

The ID of the program run before this one.

pName :: Lens' Program (Maybe Text) #

The display name of the program. This is typically the colloquial name of the tool used, for example 'bwa' or 'picard'.

pVersion :: Lens' Program (Maybe Text) #

The version of the program run.

pId :: Lens' Program (Maybe Text) #

The user specified locally unique ID of the program. Used along with `prevProgramId` to define an ordering between programs.

pCommandLine :: Lens' Program (Maybe Text) #

The command line used to run this program.

SearchReferencesRequest

data SearchReferencesRequest #

Instances

Eq SearchReferencesRequest #
Methods (==) :: SearchReferencesRequest -> SearchReferencesRequest -> Bool # (/=) :: SearchReferencesRequest -> SearchReferencesRequest -> Bool #
Data SearchReferencesRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferencesRequest -> c SearchReferencesRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferencesRequest # toConstr :: SearchReferencesRequest -> Constr # dataTypeOf :: SearchReferencesRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferencesRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferencesRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchReferencesRequest -> SearchReferencesRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferencesRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReferencesRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferencesRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferencesRequest -> m SearchReferencesRequest #
Show SearchReferencesRequest #
Methods showsPrec :: Int -> SearchReferencesRequest -> ShowS # show :: SearchReferencesRequest -> String # showList :: [SearchReferencesRequest] -> ShowS #
Generic SearchReferencesRequest #
Associated Types type Rep SearchReferencesRequest :: * -> * # Methods from :: SearchReferencesRequest -> Rep SearchReferencesRequest x # to :: Rep SearchReferencesRequest x -> SearchReferencesRequest #
ToJSON SearchReferencesRequest #
Methods toJSON :: SearchReferencesRequest -> Value # toEncoding :: SearchReferencesRequest -> Encoding # toJSONList :: [SearchReferencesRequest] -> Value # toEncodingList :: [SearchReferencesRequest] -> Encoding #
FromJSON SearchReferencesRequest #
Methods parseJSON :: Value -> Parser SearchReferencesRequest # parseJSONList :: Value -> Parser [SearchReferencesRequest] #
type Rep SearchReferencesRequest #
type Rep SearchReferencesRequest = D1 (MetaData "SearchReferencesRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReferencesRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_sReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sMD5checksums") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((::) (S1 (MetaSel (Just Symbol "_sAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((::) (S1 (MetaSel (Just Symbol "_sPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchReferencesRequest :: SearchReferencesRequest #

Creates a value of SearchReferencesRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sReferenceSetId :: Lens' SearchReferencesRequest (Maybe Text) #

If present, return only references which belong to this reference set.

sMD5checksums :: Lens' SearchReferencesRequest [Text] #

If present, return references for which the md5checksum matches exactly.

sAccessions :: Lens' SearchReferencesRequest [Text] #

If present, return references for which a prefix of any of sourceAccessions match any of these strings. Accession numbers typically have a main number and a version, for example `GCF_000001405.26`.

sPageToken :: Lens' SearchReferencesRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sPageSize :: Lens' SearchReferencesRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 4096.

BatchCreateAnnotationsResponse

data BatchCreateAnnotationsResponse #

Instances

Eq BatchCreateAnnotationsResponse #
Methods (==) :: BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse -> Bool # (/=) :: BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse -> Bool #
Data BatchCreateAnnotationsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> BatchCreateAnnotationsResponse -> c BatchCreateAnnotationsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c BatchCreateAnnotationsResponse # toConstr :: BatchCreateAnnotationsResponse -> Constr # dataTypeOf :: BatchCreateAnnotationsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c BatchCreateAnnotationsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c BatchCreateAnnotationsResponse) # gmapT :: (forall b. Data b => b -> b) -> BatchCreateAnnotationsResponse -> BatchCreateAnnotationsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> BatchCreateAnnotationsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> BatchCreateAnnotationsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> BatchCreateAnnotationsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> BatchCreateAnnotationsResponse -> m BatchCreateAnnotationsResponse #
Show BatchCreateAnnotationsResponse #
Methods showsPrec :: Int -> BatchCreateAnnotationsResponse -> ShowS # show :: BatchCreateAnnotationsResponse -> String # showList :: [BatchCreateAnnotationsResponse] -> ShowS #
Generic BatchCreateAnnotationsResponse #
Associated Types type Rep BatchCreateAnnotationsResponse :: * -> * # Methods from :: BatchCreateAnnotationsResponse -> Rep BatchCreateAnnotationsResponse x # to :: Rep BatchCreateAnnotationsResponse x -> BatchCreateAnnotationsResponse #
ToJSON BatchCreateAnnotationsResponse #
Methods toJSON :: BatchCreateAnnotationsResponse -> Value # toEncoding :: BatchCreateAnnotationsResponse -> Encoding # toJSONList :: [BatchCreateAnnotationsResponse] -> Value # toEncodingList :: [BatchCreateAnnotationsResponse] -> Encoding #
FromJSON BatchCreateAnnotationsResponse #
Methods parseJSON :: Value -> Parser BatchCreateAnnotationsResponse # parseJSONList :: Value -> Parser [BatchCreateAnnotationsResponse] #
type Rep BatchCreateAnnotationsResponse #
type Rep BatchCreateAnnotationsResponse = D1 (MetaData "BatchCreateAnnotationsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "BatchCreateAnnotationsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_bcarEntries") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Entry]))))

batchCreateAnnotationsResponse :: BatchCreateAnnotationsResponse #

Creates a value of BatchCreateAnnotationsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

bcarEntries

bcarEntries :: Lens' BatchCreateAnnotationsResponse [Entry] #

The resulting per-annotation entries, ordered consistently with the original request.

CodingSequence

data CodingSequence #

Instances

Eq CodingSequence #
Methods (==) :: CodingSequence -> CodingSequence -> Bool # (/=) :: CodingSequence -> CodingSequence -> Bool #
Data CodingSequence #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CodingSequence -> c CodingSequence # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CodingSequence # toConstr :: CodingSequence -> Constr # dataTypeOf :: CodingSequence -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CodingSequence) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CodingSequence) # gmapT :: (forall b. Data b => b -> b) -> CodingSequence -> CodingSequence # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CodingSequence -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CodingSequence -> r # gmapQ :: (forall d. Data d => d -> u) -> CodingSequence -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CodingSequence -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CodingSequence -> m CodingSequence #
Show CodingSequence #
Methods showsPrec :: Int -> CodingSequence -> ShowS # show :: CodingSequence -> String # showList :: [CodingSequence] -> ShowS #
Generic CodingSequence #
Associated Types type Rep CodingSequence :: * -> * # Methods from :: CodingSequence -> Rep CodingSequence x # to :: Rep CodingSequence x -> CodingSequence #
ToJSON CodingSequence #
Methods toJSON :: CodingSequence -> Value # toEncoding :: CodingSequence -> Encoding # toJSONList :: [CodingSequence] -> Value # toEncodingList :: [CodingSequence] -> Encoding #
FromJSON CodingSequence #
Methods parseJSON :: Value -> Parser CodingSequence # parseJSONList :: Value -> Parser [CodingSequence] #
type Rep CodingSequence #
type Rep CodingSequence = D1 (MetaData "CodingSequence" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "CodingSequence'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_csStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_csEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64))))))

codingSequence :: CodingSequence #

Creates a value of CodingSequence with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

csStart
csEnd

csStart :: Lens' CodingSequence (Maybe Int64) #

The start of the coding sequence on this annotation's reference sequence, 0-based inclusive. Note that this position is relative to the reference start, and *not* the containing annotation start.

csEnd :: Lens' CodingSequence (Maybe Int64) #

The end of the coding sequence on this annotation's reference sequence, 0-based exclusive. Note that this position is relative to the reference start, and *not* the containing annotation start.

AnnotationType

data AnnotationType #

The data type for this annotation. Must match the containing annotation set's type.

Constructors

ATAnnotationTypeUnspecified	ANNOTATION_TYPE_UNSPECIFIED
ATGeneric	`GENERIC` A `GENERIC` annotation type should be used when no other annotation type will suffice. This represents an untyped annotation of the reference genome.
ATVariant	`VARIANT` A `VARIANT` annotation type.
ATGene	`GENE` A `GENE` annotation type represents the existence of a gene at the associated reference coordinates. The start coordinate is typically the gene's transcription start site and the end is typically the end of the gene's last exon.
ATTranscript	`TRANSCRIPT` A `TRANSCRIPT` annotation type represents the assertion that a particular region of the reference genome may be transcribed as RNA.

Instances

Enum AnnotationType #
Methods succ :: AnnotationType -> AnnotationType # pred :: AnnotationType -> AnnotationType # toEnum :: Int -> AnnotationType # fromEnum :: AnnotationType -> Int # enumFrom :: AnnotationType -> [AnnotationType] # enumFromThen :: AnnotationType -> AnnotationType -> [AnnotationType] # enumFromTo :: AnnotationType -> AnnotationType -> [AnnotationType] # enumFromThenTo :: AnnotationType -> AnnotationType -> AnnotationType -> [AnnotationType] #
Eq AnnotationType #
Methods (==) :: AnnotationType -> AnnotationType -> Bool # (/=) :: AnnotationType -> AnnotationType -> Bool #
Data AnnotationType #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationType -> c AnnotationType # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationType # toConstr :: AnnotationType -> Constr # dataTypeOf :: AnnotationType -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationType) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationType) # gmapT :: (forall b. Data b => b -> b) -> AnnotationType -> AnnotationType # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationType -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationType -> r # gmapQ :: (forall d. Data d => d -> u) -> AnnotationType -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationType -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationType -> m AnnotationType #
Ord AnnotationType #
Methods compare :: AnnotationType -> AnnotationType -> Ordering # (<) :: AnnotationType -> AnnotationType -> Bool # (<=) :: AnnotationType -> AnnotationType -> Bool # (>) :: AnnotationType -> AnnotationType -> Bool # (>=) :: AnnotationType -> AnnotationType -> Bool # max :: AnnotationType -> AnnotationType -> AnnotationType # min :: AnnotationType -> AnnotationType -> AnnotationType #
Read AnnotationType #
Methods readsPrec :: Int -> ReadS AnnotationType # readList :: ReadS [AnnotationType] # readPrec :: ReadPrec AnnotationType # readListPrec :: ReadPrec [AnnotationType] #
Show AnnotationType #
Methods showsPrec :: Int -> AnnotationType -> ShowS # show :: AnnotationType -> String # showList :: [AnnotationType] -> ShowS #
Generic AnnotationType #
Associated Types type Rep AnnotationType :: * -> * # Methods from :: AnnotationType -> Rep AnnotationType x # to :: Rep AnnotationType x -> AnnotationType #
Hashable AnnotationType #
Methods hashWithSalt :: Int -> AnnotationType -> Int # hash :: AnnotationType -> Int #
ToJSON AnnotationType #
Methods toJSON :: AnnotationType -> Value # toEncoding :: AnnotationType -> Encoding # toJSONList :: [AnnotationType] -> Value # toEncodingList :: [AnnotationType] -> Encoding #
FromJSON AnnotationType #
Methods parseJSON :: Value -> Parser AnnotationType # parseJSONList :: Value -> Parser [AnnotationType] #
FromHttpApiData AnnotationType #
Methods parseUrlPiece :: Text -> Either Text AnnotationType # parseHeader :: ByteString -> Either Text AnnotationType # parseQueryParam :: Text -> Either Text AnnotationType #
ToHttpApiData AnnotationType #
Methods toUrlPiece :: AnnotationType -> Text # toEncodedUrlPiece :: AnnotationType -> Builder # toHeader :: AnnotationType -> ByteString # toQueryParam :: AnnotationType -> Text #
type Rep AnnotationType #
type Rep AnnotationType = D1 (MetaData "AnnotationType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) (C1 (MetaCons "ATAnnotationTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "ATGeneric" PrefixI False) U1)) ((:+:) (C1 (MetaCons "ATVariant" PrefixI False) U1) ((:+:) (C1 (MetaCons "ATGene" PrefixI False) U1) (C1 (MetaCons "ATTranscript" PrefixI False) U1))))

SearchReferenceSetsResponse

data SearchReferenceSetsResponse #

Instances

Eq SearchReferenceSetsResponse #
Methods (==) :: SearchReferenceSetsResponse -> SearchReferenceSetsResponse -> Bool # (/=) :: SearchReferenceSetsResponse -> SearchReferenceSetsResponse -> Bool #
Data SearchReferenceSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReferenceSetsResponse -> c SearchReferenceSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReferenceSetsResponse # toConstr :: SearchReferenceSetsResponse -> Constr # dataTypeOf :: SearchReferenceSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReferenceSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReferenceSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchReferenceSetsResponse -> SearchReferenceSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReferenceSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReferenceSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReferenceSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReferenceSetsResponse -> m SearchReferenceSetsResponse #
Show SearchReferenceSetsResponse #
Methods showsPrec :: Int -> SearchReferenceSetsResponse -> ShowS # show :: SearchReferenceSetsResponse -> String # showList :: [SearchReferenceSetsResponse] -> ShowS #
Generic SearchReferenceSetsResponse #
Associated Types type Rep SearchReferenceSetsResponse :: * -> * # Methods from :: SearchReferenceSetsResponse -> Rep SearchReferenceSetsResponse x # to :: Rep SearchReferenceSetsResponse x -> SearchReferenceSetsResponse #
ToJSON SearchReferenceSetsResponse #
Methods toJSON :: SearchReferenceSetsResponse -> Value # toEncoding :: SearchReferenceSetsResponse -> Encoding # toJSONList :: [SearchReferenceSetsResponse] -> Value # toEncodingList :: [SearchReferenceSetsResponse] -> Encoding #
FromJSON SearchReferenceSetsResponse #
Methods parseJSON :: Value -> Parser SearchReferenceSetsResponse # parseJSONList :: Value -> Parser [SearchReferenceSetsResponse] #
type Rep SearchReferenceSetsResponse #
type Rep SearchReferenceSetsResponse = D1 (MetaData "SearchReferenceSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReferenceSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srsrReferenceSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReferenceSet])))))

searchReferenceSetsResponse :: SearchReferenceSetsResponse #

Creates a value of SearchReferenceSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srsrNextPageToken :: Lens' SearchReferenceSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srsrReferenceSets :: Lens' SearchReferenceSetsResponse [ReferenceSet] #

The matching references sets.

Range

data Range #

A 0-based half-open genomic coordinate range for search requests.

See: range smart constructor.

Instances

Eq Range #
Methods (==) :: Range -> Range -> Bool # (/=) :: Range -> Range -> Bool #
Data Range #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Range -> c Range # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Range # toConstr :: Range -> Constr # dataTypeOf :: Range -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Range) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Range) # gmapT :: (forall b. Data b => b -> b) -> Range -> Range # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Range -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Range -> r # gmapQ :: (forall d. Data d => d -> u) -> Range -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Range -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Range -> m Range # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Range -> m Range # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Range -> m Range #
Show Range #
Methods showsPrec :: Int -> Range -> ShowS # show :: Range -> String # showList :: [Range] -> ShowS #
Generic Range #
Associated Types type Rep Range :: * -> * # Methods from :: Range -> Rep Range x # to :: Rep Range x -> Range #
ToJSON Range #
Methods toJSON :: Range -> Value # toEncoding :: Range -> Encoding # toJSONList :: [Range] -> Value # toEncodingList :: [Range] -> Encoding #
FromJSON Range #
Methods parseJSON :: Value -> Parser Range # parseJSONList :: Value -> Parser [Range] #
type Rep Range #
type Rep Range = D1 (MetaData "Range" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Range'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_rStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_rReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))))

range :: Range #

Creates a value of Range with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rStart :: Lens' Range (Maybe Int64) #

The start position of the range on the reference, 0-based inclusive.

rReferenceName :: Lens' Range (Maybe Text) #

The reference sequence name, for example `chr1`, `1`, or `chrX`.

rEnd :: Lens' Range (Maybe Int64) #

The end position of the range on the reference, 0-based exclusive.

ReadGroupSet

data ReadGroupSet #

A read group set is a logical collection of read groups, which are collections of reads produced by a sequencer. A read group set typically models reads corresponding to one sample, sequenced one way, and aligned one way. * A read group set belongs to one dataset. * A read group belongs to one read group set. * A read belongs to one read group. For more genomics resource definitions, see Fundamentals of Google Genomics

See: readGroupSet smart constructor.

Instances

Eq ReadGroupSet #
Methods (==) :: ReadGroupSet -> ReadGroupSet -> Bool # (/=) :: ReadGroupSet -> ReadGroupSet -> Bool #
Data ReadGroupSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupSet -> c ReadGroupSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupSet # toConstr :: ReadGroupSet -> Constr # dataTypeOf :: ReadGroupSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupSet) # gmapT :: (forall b. Data b => b -> b) -> ReadGroupSet -> ReadGroupSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSet -> r # gmapQ :: (forall d. Data d => d -> u) -> ReadGroupSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSet -> m ReadGroupSet #
Show ReadGroupSet #
Methods showsPrec :: Int -> ReadGroupSet -> ShowS # show :: ReadGroupSet -> String # showList :: [ReadGroupSet] -> ShowS #
Generic ReadGroupSet #
Associated Types type Rep ReadGroupSet :: * -> * # Methods from :: ReadGroupSet -> Rep ReadGroupSet x # to :: Rep ReadGroupSet x -> ReadGroupSet #
ToJSON ReadGroupSet #
Methods toJSON :: ReadGroupSet -> Value # toEncoding :: ReadGroupSet -> Encoding # toJSONList :: [ReadGroupSet] -> Value # toEncodingList :: [ReadGroupSet] -> Encoding #
FromJSON ReadGroupSet #
Methods parseJSON :: Value -> Parser ReadGroupSet # parseJSONList :: Value -> Parser [ReadGroupSet] #
type Rep ReadGroupSet #
type Rep ReadGroupSet = D1 (MetaData "ReadGroupSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ReadGroupSet'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_rgsReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_rgsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_rgsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rgsInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ReadGroupSetInfo)))) ((::) (S1 (MetaSel (Just Symbol "_rgsReadGroups") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReadGroup]))) (S1 (MetaSel (Just Symbol "_rgsFilename") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

readGroupSet :: ReadGroupSet #

Creates a value of ReadGroupSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rgsReferenceSetId :: Lens' ReadGroupSet (Maybe Text) #

The reference set to which the reads in this read group set are aligned.

rgsName :: Lens' ReadGroupSet (Maybe Text) #

The read group set name. By default this will be initialized to the sample name of the sequenced data contained in this set.

rgsDataSetId :: Lens' ReadGroupSet (Maybe Text) #

The dataset to which this read group set belongs.

rgsId :: Lens' ReadGroupSet (Maybe Text) #

The server-generated read group set ID, unique for all read group sets.

rgsInfo :: Lens' ReadGroupSet (Maybe ReadGroupSetInfo) #

A map of additional read group set information.

rgsReadGroups :: Lens' ReadGroupSet [ReadGroup] #

The read groups in this set. There are typically 1-10 read groups in a read group set.

rgsFilename :: Lens' ReadGroupSet (Maybe Text) #

The filename of the original source file for this read group set, if any.

Xgafv

data Xgafv #

V1 error format.

Constructors

X1	`1` v1 error format
X2	`2` v2 error format

Instances

Enum Xgafv #
Methods succ :: Xgafv -> Xgafv # pred :: Xgafv -> Xgafv # toEnum :: Int -> Xgafv # fromEnum :: Xgafv -> Int # enumFrom :: Xgafv -> [Xgafv] # enumFromThen :: Xgafv -> Xgafv -> [Xgafv] # enumFromTo :: Xgafv -> Xgafv -> [Xgafv] # enumFromThenTo :: Xgafv -> Xgafv -> Xgafv -> [Xgafv] #
Eq Xgafv #
Methods (==) :: Xgafv -> Xgafv -> Bool # (/=) :: Xgafv -> Xgafv -> Bool #
Data Xgafv #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Xgafv -> c Xgafv # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Xgafv # toConstr :: Xgafv -> Constr # dataTypeOf :: Xgafv -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Xgafv) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Xgafv) # gmapT :: (forall b. Data b => b -> b) -> Xgafv -> Xgafv # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Xgafv -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Xgafv -> r # gmapQ :: (forall d. Data d => d -> u) -> Xgafv -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Xgafv -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Xgafv -> m Xgafv #
Ord Xgafv #
Methods compare :: Xgafv -> Xgafv -> Ordering # (<) :: Xgafv -> Xgafv -> Bool # (<=) :: Xgafv -> Xgafv -> Bool # (>) :: Xgafv -> Xgafv -> Bool # (>=) :: Xgafv -> Xgafv -> Bool # max :: Xgafv -> Xgafv -> Xgafv # min :: Xgafv -> Xgafv -> Xgafv #
Read Xgafv #
Methods readsPrec :: Int -> ReadS Xgafv # readList :: ReadS [Xgafv] # readPrec :: ReadPrec Xgafv # readListPrec :: ReadPrec [Xgafv] #
Show Xgafv #
Methods showsPrec :: Int -> Xgafv -> ShowS # show :: Xgafv -> String # showList :: [Xgafv] -> ShowS #
Generic Xgafv #
Associated Types type Rep Xgafv :: * -> * # Methods from :: Xgafv -> Rep Xgafv x # to :: Rep Xgafv x -> Xgafv #
Hashable Xgafv #
Methods hashWithSalt :: Int -> Xgafv -> Int # hash :: Xgafv -> Int #
ToJSON Xgafv #
Methods toJSON :: Xgafv -> Value # toEncoding :: Xgafv -> Encoding # toJSONList :: [Xgafv] -> Value # toEncodingList :: [Xgafv] -> Encoding #
FromJSON Xgafv #
Methods parseJSON :: Value -> Parser Xgafv # parseJSONList :: Value -> Parser [Xgafv] #
FromHttpApiData Xgafv #
Methods parseUrlPiece :: Text -> Either Text Xgafv # parseHeader :: ByteString -> Either Text Xgafv # parseQueryParam :: Text -> Either Text Xgafv #
ToHttpApiData Xgafv #
Methods toUrlPiece :: Xgafv -> Text # toEncodedUrlPiece :: Xgafv -> Builder # toHeader :: Xgafv -> ByteString # toQueryParam :: Xgafv -> Text #
type Rep Xgafv #
type Rep Xgafv = D1 (MetaData "Xgafv" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) (C1 (MetaCons "X1" PrefixI False) U1) (C1 (MetaCons "X2" PrefixI False) U1))

ExportReadGroupSetRequest

data ExportReadGroupSetRequest #

The read group set export request.

See: exportReadGroupSetRequest smart constructor.

Instances

Eq ExportReadGroupSetRequest #
Methods (==) :: ExportReadGroupSetRequest -> ExportReadGroupSetRequest -> Bool # (/=) :: ExportReadGroupSetRequest -> ExportReadGroupSetRequest -> Bool #
Data ExportReadGroupSetRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportReadGroupSetRequest -> c ExportReadGroupSetRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportReadGroupSetRequest # toConstr :: ExportReadGroupSetRequest -> Constr # dataTypeOf :: ExportReadGroupSetRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ExportReadGroupSetRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportReadGroupSetRequest) # gmapT :: (forall b. Data b => b -> b) -> ExportReadGroupSetRequest -> ExportReadGroupSetRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportReadGroupSetRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportReadGroupSetRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> ExportReadGroupSetRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportReadGroupSetRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportReadGroupSetRequest -> m ExportReadGroupSetRequest #
Show ExportReadGroupSetRequest #
Methods showsPrec :: Int -> ExportReadGroupSetRequest -> ShowS # show :: ExportReadGroupSetRequest -> String # showList :: [ExportReadGroupSetRequest] -> ShowS #
Generic ExportReadGroupSetRequest #
Associated Types type Rep ExportReadGroupSetRequest :: * -> * # Methods from :: ExportReadGroupSetRequest -> Rep ExportReadGroupSetRequest x # to :: Rep ExportReadGroupSetRequest x -> ExportReadGroupSetRequest #
ToJSON ExportReadGroupSetRequest #
Methods toJSON :: ExportReadGroupSetRequest -> Value # toEncoding :: ExportReadGroupSetRequest -> Encoding # toJSONList :: [ExportReadGroupSetRequest] -> Value # toEncodingList :: [ExportReadGroupSetRequest] -> Encoding #
FromJSON ExportReadGroupSetRequest #
Methods parseJSON :: Value -> Parser ExportReadGroupSetRequest # parseJSONList :: Value -> Parser [ExportReadGroupSetRequest] #
type Rep ExportReadGroupSetRequest #
type Rep ExportReadGroupSetRequest = D1 (MetaData "ExportReadGroupSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ExportReadGroupSetRequest'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_ergsrReferenceNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) ((::) (S1 (MetaSel (Just Symbol "_ergsrExportURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ergsrProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

exportReadGroupSetRequest :: ExportReadGroupSetRequest #

Creates a value of ExportReadGroupSetRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ergsrReferenceNames :: Lens' ExportReadGroupSetRequest [Text] #

The reference names to export. If this is not specified, all reference sequences, including unmapped reads, are exported. Use `*` to export only unmapped reads.

ergsrExportURI :: Lens' ExportReadGroupSetRequest (Maybe Text) #

Required. A Google Cloud Storage URI for the exported BAM file. The currently authenticated user must have write access to the new file. An error will be returned if the URI already contains data.

ergsrProjectId :: Lens' ExportReadGroupSetRequest (Maybe Text) #

Required. The Google Cloud project ID that owns this export. The caller must have WRITE access to this project.

ImportVariantsResponse

data ImportVariantsResponse #

The variant data import response.

See: importVariantsResponse smart constructor.

Instances

Eq ImportVariantsResponse #
Methods (==) :: ImportVariantsResponse -> ImportVariantsResponse -> Bool # (/=) :: ImportVariantsResponse -> ImportVariantsResponse -> Bool #
Data ImportVariantsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsResponse -> c ImportVariantsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsResponse # toConstr :: ImportVariantsResponse -> Constr # dataTypeOf :: ImportVariantsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsResponse) # gmapT :: (forall b. Data b => b -> b) -> ImportVariantsResponse -> ImportVariantsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsResponse -> m ImportVariantsResponse #
Show ImportVariantsResponse #
Methods showsPrec :: Int -> ImportVariantsResponse -> ShowS # show :: ImportVariantsResponse -> String # showList :: [ImportVariantsResponse] -> ShowS #
Generic ImportVariantsResponse #
Associated Types type Rep ImportVariantsResponse :: * -> * # Methods from :: ImportVariantsResponse -> Rep ImportVariantsResponse x # to :: Rep ImportVariantsResponse x -> ImportVariantsResponse #
ToJSON ImportVariantsResponse #
Methods toJSON :: ImportVariantsResponse -> Value # toEncoding :: ImportVariantsResponse -> Encoding # toJSONList :: [ImportVariantsResponse] -> Value # toEncodingList :: [ImportVariantsResponse] -> Encoding #
FromJSON ImportVariantsResponse #
Methods parseJSON :: Value -> Parser ImportVariantsResponse # parseJSONList :: Value -> Parser [ImportVariantsResponse] #
type Rep ImportVariantsResponse #
type Rep ImportVariantsResponse = D1 (MetaData "ImportVariantsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ImportVariantsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_ivrCallSetIds") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

importVariantsResponse :: ImportVariantsResponse #

Creates a value of ImportVariantsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ivrCallSetIds

ivrCallSetIds :: Lens' ImportVariantsResponse [Text] #

IDs of the call sets created during the import.

ListCoverageBucketsResponse

data ListCoverageBucketsResponse #

Instances

Eq ListCoverageBucketsResponse #
Methods (==) :: ListCoverageBucketsResponse -> ListCoverageBucketsResponse -> Bool # (/=) :: ListCoverageBucketsResponse -> ListCoverageBucketsResponse -> Bool #
Data ListCoverageBucketsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListCoverageBucketsResponse -> c ListCoverageBucketsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListCoverageBucketsResponse # toConstr :: ListCoverageBucketsResponse -> Constr # dataTypeOf :: ListCoverageBucketsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ListCoverageBucketsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListCoverageBucketsResponse) # gmapT :: (forall b. Data b => b -> b) -> ListCoverageBucketsResponse -> ListCoverageBucketsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListCoverageBucketsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListCoverageBucketsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ListCoverageBucketsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ListCoverageBucketsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListCoverageBucketsResponse -> m ListCoverageBucketsResponse #
Show ListCoverageBucketsResponse #
Methods showsPrec :: Int -> ListCoverageBucketsResponse -> ShowS # show :: ListCoverageBucketsResponse -> String # showList :: [ListCoverageBucketsResponse] -> ShowS #
Generic ListCoverageBucketsResponse #
Associated Types type Rep ListCoverageBucketsResponse :: * -> * # Methods from :: ListCoverageBucketsResponse -> Rep ListCoverageBucketsResponse x # to :: Rep ListCoverageBucketsResponse x -> ListCoverageBucketsResponse #
ToJSON ListCoverageBucketsResponse #
Methods toJSON :: ListCoverageBucketsResponse -> Value # toEncoding :: ListCoverageBucketsResponse -> Encoding # toJSONList :: [ListCoverageBucketsResponse] -> Value # toEncodingList :: [ListCoverageBucketsResponse] -> Encoding #
FromJSON ListCoverageBucketsResponse #
Methods parseJSON :: Value -> Parser ListCoverageBucketsResponse # parseJSONList :: Value -> Parser [ListCoverageBucketsResponse] #
type Rep ListCoverageBucketsResponse #
type Rep ListCoverageBucketsResponse = D1 (MetaData "ListCoverageBucketsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ListCoverageBucketsResponse'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_lcbrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_lcbrBucketWidth") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_lcbrCoverageBuckets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CoverageBucket]))))))

listCoverageBucketsResponse :: ListCoverageBucketsResponse #

Creates a value of ListCoverageBucketsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

lcbrNextPageToken :: Lens' ListCoverageBucketsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

lcbrBucketWidth :: Lens' ListCoverageBucketsResponse (Maybe Int64) #

The length of each coverage bucket in base pairs. Note that buckets at the end of a reference sequence may be shorter. This value is omitted if the bucket width is infinity (the default behaviour, with no range or `targetBucketWidth`).

lcbrCoverageBuckets :: Lens' ListCoverageBucketsResponse [CoverageBucket] #

The coverage buckets. The list of buckets is sparse; a bucket with 0 overlapping reads is not returned. A bucket never crosses more than one reference sequence. Each bucket has width `bucketWidth`, unless its end is the end of the reference sequence.

TestIAMPermissionsRequest

data TestIAMPermissionsRequest #

Request message for `TestIamPermissions` method.

See: testIAMPermissionsRequest smart constructor.

Instances

Eq TestIAMPermissionsRequest #
Methods (==) :: TestIAMPermissionsRequest -> TestIAMPermissionsRequest -> Bool # (/=) :: TestIAMPermissionsRequest -> TestIAMPermissionsRequest -> Bool #
Data TestIAMPermissionsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> TestIAMPermissionsRequest -> c TestIAMPermissionsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c TestIAMPermissionsRequest # toConstr :: TestIAMPermissionsRequest -> Constr # dataTypeOf :: TestIAMPermissionsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c TestIAMPermissionsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c TestIAMPermissionsRequest) # gmapT :: (forall b. Data b => b -> b) -> TestIAMPermissionsRequest -> TestIAMPermissionsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> TestIAMPermissionsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> TestIAMPermissionsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsRequest -> m TestIAMPermissionsRequest #
Show TestIAMPermissionsRequest #
Methods showsPrec :: Int -> TestIAMPermissionsRequest -> ShowS # show :: TestIAMPermissionsRequest -> String # showList :: [TestIAMPermissionsRequest] -> ShowS #
Generic TestIAMPermissionsRequest #
Associated Types type Rep TestIAMPermissionsRequest :: * -> * # Methods from :: TestIAMPermissionsRequest -> Rep TestIAMPermissionsRequest x # to :: Rep TestIAMPermissionsRequest x -> TestIAMPermissionsRequest #
ToJSON TestIAMPermissionsRequest #
Methods toJSON :: TestIAMPermissionsRequest -> Value # toEncoding :: TestIAMPermissionsRequest -> Encoding # toJSONList :: [TestIAMPermissionsRequest] -> Value # toEncodingList :: [TestIAMPermissionsRequest] -> Encoding #
FromJSON TestIAMPermissionsRequest #
Methods parseJSON :: Value -> Parser TestIAMPermissionsRequest # parseJSONList :: Value -> Parser [TestIAMPermissionsRequest] #
type Rep TestIAMPermissionsRequest #
type Rep TestIAMPermissionsRequest = D1 (MetaData "TestIAMPermissionsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "TestIAMPermissionsRequest'" PrefixI True) (S1 (MetaSel (Just Symbol "_tiprPermissions") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

testIAMPermissionsRequest :: TestIAMPermissionsRequest #

Creates a value of TestIAMPermissionsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

tiprPermissions

tiprPermissions :: Lens' TestIAMPermissionsRequest [Text] #

REQUIRED: The set of permissions to check for the 'resource'. Permissions with wildcards (such as '*' or 'storage.*') are not allowed. Allowed permissions are: * `genomics.datasets.create` * `genomics.datasets.delete` * `genomics.datasets.get` * `genomics.datasets.list` * `genomics.datasets.update` * `genomics.datasets.getIamPolicy` * `genomics.datasets.setIamPolicy`

ImportReadGroupSetsResponse

data ImportReadGroupSetsResponse #

The read group set import response.

See: importReadGroupSetsResponse smart constructor.

Instances

Eq ImportReadGroupSetsResponse #
Methods (==) :: ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse -> Bool # (/=) :: ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse -> Bool #
Data ImportReadGroupSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsResponse -> c ImportReadGroupSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsResponse # toConstr :: ImportReadGroupSetsResponse -> Constr # dataTypeOf :: ImportReadGroupSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsResponse -> ImportReadGroupSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsResponse -> m ImportReadGroupSetsResponse #
Show ImportReadGroupSetsResponse #
Methods showsPrec :: Int -> ImportReadGroupSetsResponse -> ShowS # show :: ImportReadGroupSetsResponse -> String # showList :: [ImportReadGroupSetsResponse] -> ShowS #
Generic ImportReadGroupSetsResponse #
Associated Types type Rep ImportReadGroupSetsResponse :: * -> * # Methods from :: ImportReadGroupSetsResponse -> Rep ImportReadGroupSetsResponse x # to :: Rep ImportReadGroupSetsResponse x -> ImportReadGroupSetsResponse #
ToJSON ImportReadGroupSetsResponse #
Methods toJSON :: ImportReadGroupSetsResponse -> Value # toEncoding :: ImportReadGroupSetsResponse -> Encoding # toJSONList :: [ImportReadGroupSetsResponse] -> Value # toEncodingList :: [ImportReadGroupSetsResponse] -> Encoding #
FromJSON ImportReadGroupSetsResponse #
Methods parseJSON :: Value -> Parser ImportReadGroupSetsResponse # parseJSONList :: Value -> Parser [ImportReadGroupSetsResponse] #
type Rep ImportReadGroupSetsResponse #
type Rep ImportReadGroupSetsResponse = D1 (MetaData "ImportReadGroupSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ImportReadGroupSetsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_irgsrReadGroupSetIds") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

importReadGroupSetsResponse :: ImportReadGroupSetsResponse #

Creates a value of ImportReadGroupSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

irgsrReadGroupSetIds

irgsrReadGroupSetIds :: Lens' ImportReadGroupSetsResponse [Text] #

IDs of the read group sets that were created.

LinearAlignment

data LinearAlignment #

A linear alignment can be represented by one CIGAR string. Describes the mapped position and local alignment of the read to the reference.

See: linearAlignment smart constructor.

Instances

Eq LinearAlignment #
Methods (==) :: LinearAlignment -> LinearAlignment -> Bool # (/=) :: LinearAlignment -> LinearAlignment -> Bool #
Data LinearAlignment #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> LinearAlignment -> c LinearAlignment # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c LinearAlignment # toConstr :: LinearAlignment -> Constr # dataTypeOf :: LinearAlignment -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c LinearAlignment) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c LinearAlignment) # gmapT :: (forall b. Data b => b -> b) -> LinearAlignment -> LinearAlignment # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> LinearAlignment -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> LinearAlignment -> r # gmapQ :: (forall d. Data d => d -> u) -> LinearAlignment -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> LinearAlignment -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> LinearAlignment -> m LinearAlignment #
Show LinearAlignment #
Methods showsPrec :: Int -> LinearAlignment -> ShowS # show :: LinearAlignment -> String # showList :: [LinearAlignment] -> ShowS #
Generic LinearAlignment #
Associated Types type Rep LinearAlignment :: * -> * # Methods from :: LinearAlignment -> Rep LinearAlignment x # to :: Rep LinearAlignment x -> LinearAlignment #
ToJSON LinearAlignment #
Methods toJSON :: LinearAlignment -> Value # toEncoding :: LinearAlignment -> Encoding # toJSONList :: [LinearAlignment] -> Value # toEncodingList :: [LinearAlignment] -> Encoding #
FromJSON LinearAlignment #
Methods parseJSON :: Value -> Parser LinearAlignment # parseJSONList :: Value -> Parser [LinearAlignment] #
type Rep LinearAlignment #
type Rep LinearAlignment = D1 (MetaData "LinearAlignment" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "LinearAlignment'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_laCigar") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [CigarUnit]))) ((::) (S1 (MetaSel (Just Symbol "_laMAppingQuality") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_laPosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Position))))))

linearAlignment :: LinearAlignment #

Creates a value of LinearAlignment with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

laCigar :: Lens' LinearAlignment [CigarUnit] #

Represents the local alignment of this sequence (alignment matches, indels, etc) against the reference.

laMAppingQuality :: Lens' LinearAlignment (Maybe Int32) #

The mapping quality of this alignment. Represents how likely the read maps to this position as opposed to other locations. Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to the nearest integer.

laPosition :: Lens' LinearAlignment (Maybe Position) #

The position of this alignment.

AnnotationSet

data AnnotationSet #

An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.

See: annotationSet smart constructor.

Instances

Eq AnnotationSet #
Methods (==) :: AnnotationSet -> AnnotationSet -> Bool # (/=) :: AnnotationSet -> AnnotationSet -> Bool #
Data AnnotationSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSet -> c AnnotationSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSet # toConstr :: AnnotationSet -> Constr # dataTypeOf :: AnnotationSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSet) # gmapT :: (forall b. Data b => b -> b) -> AnnotationSet -> AnnotationSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSet -> r # gmapQ :: (forall d. Data d => d -> u) -> AnnotationSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSet -> m AnnotationSet #
Show AnnotationSet #
Methods showsPrec :: Int -> AnnotationSet -> ShowS # show :: AnnotationSet -> String # showList :: [AnnotationSet] -> ShowS #
Generic AnnotationSet #
Associated Types type Rep AnnotationSet :: * -> * # Methods from :: AnnotationSet -> Rep AnnotationSet x # to :: Rep AnnotationSet x -> AnnotationSet #
ToJSON AnnotationSet #
Methods toJSON :: AnnotationSet -> Value # toEncoding :: AnnotationSet -> Encoding # toJSONList :: [AnnotationSet] -> Value # toEncodingList :: [AnnotationSet] -> Encoding #
FromJSON AnnotationSet #
Methods parseJSON :: Value -> Parser AnnotationSet # parseJSONList :: Value -> Parser [AnnotationSet] #
type Rep AnnotationSet #
type Rep AnnotationSet = D1 (MetaData "AnnotationSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "AnnotationSet'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_asReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_asName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_asId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationSetType)))) ((::) (S1 (MetaSel (Just Symbol "_asSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_asInfo") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe AnnotationSetInfo)))))))

annotationSet :: AnnotationSet #

Creates a value of AnnotationSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

asReferenceSetId :: Lens' AnnotationSet (Maybe Text) #

The ID of the reference set that defines the coordinate space for this set's annotations.

asName :: Lens' AnnotationSet (Maybe Text) #

The display name for this annotation set.

asDataSetId :: Lens' AnnotationSet (Maybe Text) #

The dataset to which this annotation set belongs.

asId :: Lens' AnnotationSet (Maybe Text) #

The server-generated annotation set ID, unique across all annotation sets.

asType :: Lens' AnnotationSet (Maybe AnnotationSetType) #

The type of annotations contained within this set.

asSourceURI :: Lens' AnnotationSet (Maybe Text) #

The source URI describing the file from which this annotation set was generated, if any.

asInfo :: Lens' AnnotationSet (Maybe AnnotationSetInfo) #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

VariantSet

data VariantSet #

A variant set is a collection of call sets and variants. It contains summary statistics of those contents. A variant set belongs to a dataset. For more genomics resource definitions, see Fundamentals of Google Genomics

See: variantSet smart constructor.

Instances

Eq VariantSet #
Methods (==) :: VariantSet -> VariantSet -> Bool # (/=) :: VariantSet -> VariantSet -> Bool #
Data VariantSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSet -> c VariantSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSet # toConstr :: VariantSet -> Constr # dataTypeOf :: VariantSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSet) # gmapT :: (forall b. Data b => b -> b) -> VariantSet -> VariantSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSet -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSet -> m VariantSet #
Show VariantSet #
Methods showsPrec :: Int -> VariantSet -> ShowS # show :: VariantSet -> String # showList :: [VariantSet] -> ShowS #
Generic VariantSet #
Associated Types type Rep VariantSet :: * -> * # Methods from :: VariantSet -> Rep VariantSet x # to :: Rep VariantSet x -> VariantSet #
ToJSON VariantSet #
Methods toJSON :: VariantSet -> Value # toEncoding :: VariantSet -> Encoding # toJSONList :: [VariantSet] -> Value # toEncodingList :: [VariantSet] -> Encoding #
FromJSON VariantSet #
Methods parseJSON :: Value -> Parser VariantSet # parseJSONList :: Value -> Parser [VariantSet] #
type Rep VariantSet #
type Rep VariantSet = D1 (MetaData "VariantSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "VariantSet'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_vsReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_vsName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_vsReferenceBounds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReferenceBound]))) (S1 (MetaSel (Just Symbol "_vsMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantSetMetadata])))) ((::) (S1 (MetaSel (Just Symbol "_vsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_vsDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

variantSet :: VariantSet #

Creates a value of VariantSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vsReferenceSetId :: Lens' VariantSet (Maybe Text) #

The reference set to which the variant set is mapped. The reference set describes the alignment provenance of the variant set, while the `referenceBounds` describe the shape of the actual variant data. The reference set's reference names are a superset of those found in the `referenceBounds`. For example, given a variant set that is mapped to the GRCh38 reference set and contains a single variant on reference 'X', `referenceBounds` would contain only an entry for 'X', while the associated reference set enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.

vsName :: Lens' VariantSet (Maybe Text) #

User-specified, mutable name.

vsDataSetId :: Lens' VariantSet (Maybe Text) #

The dataset to which this variant set belongs.

vsReferenceBounds :: Lens' VariantSet [ReferenceBound] #

A list of all references used by the variants in a variant set with associated coordinate upper bounds for each one.

vsMetadata :: Lens' VariantSet [VariantSetMetadata] #

The metadata associated with this variant set.

vsId :: Lens' VariantSet (Maybe Text) #

The server-generated variant set ID, unique across all variant sets.

vsDescription :: Lens' VariantSet (Maybe Text) #

A textual description of this variant set.

CigarUnitOperation

data CigarUnitOperation #

Constructors

OperationUnspecified	OPERATION_UNSPECIFIED
AlignmentMatch	`ALIGNMENT_MATCH` An alignment match indicates that a sequence can be aligned to the reference without evidence of an INDEL. Unlike the `SEQUENCE_MATCH` and `SEQUENCE_MISMATCH` operators, the `ALIGNMENT_MATCH` operator does not indicate whether the reference and read sequences are an exact match. This operator is equivalent to SAM's `M`.
Insert	`INSERT` The insert operator indicates that the read contains evidence of bases being inserted into the reference. This operator is equivalent to SAM's `I`.
Delete'	`DELETE` The delete operator indicates that the read contains evidence of bases being deleted from the reference. This operator is equivalent to SAM's `D`.
Skip	`SKIP` The skip operator indicates that this read skips a long segment of the reference, but the bases have not been deleted. This operator is commonly used when working with RNA-seq data, where reads may skip long segments of the reference between exons. This operator is equivalent to SAM's `N`.
ClipSoft	`CLIP_SOFT` The soft clip operator indicates that bases at the start/end of a read have not been considered during alignment. This may occur if the majority of a read maps, except for low quality bases at the start/end of a read. This operator is equivalent to SAM's `S`. Bases that are soft clipped will still be stored in the read.
ClipHard	`CLIP_HARD` The hard clip operator indicates that bases at the start/end of a read have been omitted from this alignment. This may occur if this linear alignment is part of a chimeric alignment, or if the read has been trimmed (for example, during error correction or to trim poly-A tails for RNA-seq). This operator is equivalent to SAM's `H`.
Pad	`PAD` The pad operator indicates that there is padding in an alignment. This operator is equivalent to SAM's `P`.
SequenceMatch	`SEQUENCE_MATCH` This operator indicates that this portion of the aligned sequence exactly matches the reference. This operator is equivalent to SAM's `=`.
SequenceMismatch	`SEQUENCE_MISMATCH` This operator indicates that this portion of the aligned sequence is an alignment match to the reference, but a sequence mismatch. This can indicate a SNP or a read error. This operator is equivalent to SAM's `X`.

Instances

Enum CigarUnitOperation #
Methods succ :: CigarUnitOperation -> CigarUnitOperation # pred :: CigarUnitOperation -> CigarUnitOperation # toEnum :: Int -> CigarUnitOperation # fromEnum :: CigarUnitOperation -> Int # enumFrom :: CigarUnitOperation -> [CigarUnitOperation] # enumFromThen :: CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation] # enumFromTo :: CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation] # enumFromThenTo :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation -> [CigarUnitOperation] #
Eq CigarUnitOperation #
Methods (==) :: CigarUnitOperation -> CigarUnitOperation -> Bool # (/=) :: CigarUnitOperation -> CigarUnitOperation -> Bool #
Data CigarUnitOperation #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CigarUnitOperation -> c CigarUnitOperation # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CigarUnitOperation # toConstr :: CigarUnitOperation -> Constr # dataTypeOf :: CigarUnitOperation -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CigarUnitOperation) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CigarUnitOperation) # gmapT :: (forall b. Data b => b -> b) -> CigarUnitOperation -> CigarUnitOperation # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnitOperation -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnitOperation -> r # gmapQ :: (forall d. Data d => d -> u) -> CigarUnitOperation -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CigarUnitOperation -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnitOperation -> m CigarUnitOperation #
Ord CigarUnitOperation #
Methods compare :: CigarUnitOperation -> CigarUnitOperation -> Ordering # (<) :: CigarUnitOperation -> CigarUnitOperation -> Bool # (<=) :: CigarUnitOperation -> CigarUnitOperation -> Bool # (>) :: CigarUnitOperation -> CigarUnitOperation -> Bool # (>=) :: CigarUnitOperation -> CigarUnitOperation -> Bool # max :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation # min :: CigarUnitOperation -> CigarUnitOperation -> CigarUnitOperation #
Read CigarUnitOperation #
Methods readsPrec :: Int -> ReadS CigarUnitOperation # readList :: ReadS [CigarUnitOperation] # readPrec :: ReadPrec CigarUnitOperation # readListPrec :: ReadPrec [CigarUnitOperation] #
Show CigarUnitOperation #
Methods showsPrec :: Int -> CigarUnitOperation -> ShowS # show :: CigarUnitOperation -> String # showList :: [CigarUnitOperation] -> ShowS #
Generic CigarUnitOperation #
Associated Types type Rep CigarUnitOperation :: * -> * # Methods from :: CigarUnitOperation -> Rep CigarUnitOperation x # to :: Rep CigarUnitOperation x -> CigarUnitOperation #
Hashable CigarUnitOperation #
Methods hashWithSalt :: Int -> CigarUnitOperation -> Int # hash :: CigarUnitOperation -> Int #
ToJSON CigarUnitOperation #
Methods toJSON :: CigarUnitOperation -> Value # toEncoding :: CigarUnitOperation -> Encoding # toJSONList :: [CigarUnitOperation] -> Value # toEncodingList :: [CigarUnitOperation] -> Encoding #
FromJSON CigarUnitOperation #
Methods parseJSON :: Value -> Parser CigarUnitOperation # parseJSONList :: Value -> Parser [CigarUnitOperation] #
FromHttpApiData CigarUnitOperation #
Methods parseUrlPiece :: Text -> Either Text CigarUnitOperation # parseHeader :: ByteString -> Either Text CigarUnitOperation # parseQueryParam :: Text -> Either Text CigarUnitOperation #
ToHttpApiData CigarUnitOperation #
Methods toUrlPiece :: CigarUnitOperation -> Text # toEncodedUrlPiece :: CigarUnitOperation -> Builder # toHeader :: CigarUnitOperation -> ByteString # toQueryParam :: CigarUnitOperation -> Text #
type Rep CigarUnitOperation #
type Rep CigarUnitOperation = D1 (MetaData "CigarUnitOperation" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "OperationUnspecified" PrefixI False) U1) (C1 (MetaCons "AlignmentMatch" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Insert" PrefixI False) U1) ((:+:) (C1 (MetaCons "Delete'" PrefixI False) U1) (C1 (MetaCons "Skip" PrefixI False) U1)))) ((:+:) ((:+:) (C1 (MetaCons "ClipSoft" PrefixI False) U1) (C1 (MetaCons "ClipHard" PrefixI False) U1)) ((:+:) (C1 (MetaCons "Pad" PrefixI False) U1) ((:+:) (C1 (MetaCons "SequenceMatch" PrefixI False) U1) (C1 (MetaCons "SequenceMismatch" PrefixI False) U1)))))

VariantSetMetadataType

data VariantSetMetadataType #

The type of data. Possible types include: Integer, Float, Flag, Character, and String.

Constructors

TypeUnspecified	TYPE_UNSPECIFIED
Integer	INTEGER
Float	FLOAT
Flag	FLAG
Character	CHARACTER
String	STRING

Instances

Enum VariantSetMetadataType #
Methods succ :: VariantSetMetadataType -> VariantSetMetadataType # pred :: VariantSetMetadataType -> VariantSetMetadataType # toEnum :: Int -> VariantSetMetadataType # fromEnum :: VariantSetMetadataType -> Int # enumFrom :: VariantSetMetadataType -> [VariantSetMetadataType] # enumFromThen :: VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType] # enumFromTo :: VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType] # enumFromThenTo :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType -> [VariantSetMetadataType] #
Eq VariantSetMetadataType #
Methods (==) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool # (/=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool #
Data VariantSetMetadataType #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadataType -> c VariantSetMetadataType # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadataType # toConstr :: VariantSetMetadataType -> Constr # dataTypeOf :: VariantSetMetadataType -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadataType) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadataType) # gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadataType -> VariantSetMetadataType # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataType -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataType -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadataType -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadataType -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataType -> m VariantSetMetadataType #
Ord VariantSetMetadataType #
Methods compare :: VariantSetMetadataType -> VariantSetMetadataType -> Ordering # (<) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool # (<=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool # (>) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool # (>=) :: VariantSetMetadataType -> VariantSetMetadataType -> Bool # max :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType # min :: VariantSetMetadataType -> VariantSetMetadataType -> VariantSetMetadataType #
Read VariantSetMetadataType #
Methods readsPrec :: Int -> ReadS VariantSetMetadataType # readList :: ReadS [VariantSetMetadataType] # readPrec :: ReadPrec VariantSetMetadataType # readListPrec :: ReadPrec [VariantSetMetadataType] #
Show VariantSetMetadataType #
Methods showsPrec :: Int -> VariantSetMetadataType -> ShowS # show :: VariantSetMetadataType -> String # showList :: [VariantSetMetadataType] -> ShowS #
Generic VariantSetMetadataType #
Associated Types type Rep VariantSetMetadataType :: * -> * # Methods from :: VariantSetMetadataType -> Rep VariantSetMetadataType x # to :: Rep VariantSetMetadataType x -> VariantSetMetadataType #
Hashable VariantSetMetadataType #
Methods hashWithSalt :: Int -> VariantSetMetadataType -> Int # hash :: VariantSetMetadataType -> Int #
ToJSON VariantSetMetadataType #
Methods toJSON :: VariantSetMetadataType -> Value # toEncoding :: VariantSetMetadataType -> Encoding # toJSONList :: [VariantSetMetadataType] -> Value # toEncodingList :: [VariantSetMetadataType] -> Encoding #
FromJSON VariantSetMetadataType #
Methods parseJSON :: Value -> Parser VariantSetMetadataType # parseJSONList :: Value -> Parser [VariantSetMetadataType] #
FromHttpApiData VariantSetMetadataType #
Methods parseUrlPiece :: Text -> Either Text VariantSetMetadataType # parseHeader :: ByteString -> Either Text VariantSetMetadataType # parseQueryParam :: Text -> Either Text VariantSetMetadataType #
ToHttpApiData VariantSetMetadataType #
Methods toUrlPiece :: VariantSetMetadataType -> Text # toEncodedUrlPiece :: VariantSetMetadataType -> Builder # toHeader :: VariantSetMetadataType -> ByteString # toQueryParam :: VariantSetMetadataType -> Text #
type Rep VariantSetMetadataType #
type Rep VariantSetMetadataType = D1 (MetaData "VariantSetMetadataType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) (C1 (MetaCons "TypeUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "Integer" PrefixI False) U1) (C1 (MetaCons "Float" PrefixI False) U1))) ((:+:) (C1 (MetaCons "Flag" PrefixI False) U1) ((:+:) (C1 (MetaCons "Character" PrefixI False) U1) (C1 (MetaCons "String" PrefixI False) U1))))

TestIAMPermissionsResponse

data TestIAMPermissionsResponse #

Response message for `TestIamPermissions` method.

See: testIAMPermissionsResponse smart constructor.

Instances

Eq TestIAMPermissionsResponse #
Methods (==) :: TestIAMPermissionsResponse -> TestIAMPermissionsResponse -> Bool # (/=) :: TestIAMPermissionsResponse -> TestIAMPermissionsResponse -> Bool #
Data TestIAMPermissionsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> TestIAMPermissionsResponse -> c TestIAMPermissionsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c TestIAMPermissionsResponse # toConstr :: TestIAMPermissionsResponse -> Constr # dataTypeOf :: TestIAMPermissionsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c TestIAMPermissionsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c TestIAMPermissionsResponse) # gmapT :: (forall b. Data b => b -> b) -> TestIAMPermissionsResponse -> TestIAMPermissionsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> TestIAMPermissionsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> TestIAMPermissionsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> TestIAMPermissionsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> TestIAMPermissionsResponse -> m TestIAMPermissionsResponse #
Show TestIAMPermissionsResponse #
Methods showsPrec :: Int -> TestIAMPermissionsResponse -> ShowS # show :: TestIAMPermissionsResponse -> String # showList :: [TestIAMPermissionsResponse] -> ShowS #
Generic TestIAMPermissionsResponse #
Associated Types type Rep TestIAMPermissionsResponse :: * -> * # Methods from :: TestIAMPermissionsResponse -> Rep TestIAMPermissionsResponse x # to :: Rep TestIAMPermissionsResponse x -> TestIAMPermissionsResponse #
ToJSON TestIAMPermissionsResponse #
Methods toJSON :: TestIAMPermissionsResponse -> Value # toEncoding :: TestIAMPermissionsResponse -> Encoding # toJSONList :: [TestIAMPermissionsResponse] -> Value # toEncodingList :: [TestIAMPermissionsResponse] -> Encoding #
FromJSON TestIAMPermissionsResponse #
Methods parseJSON :: Value -> Parser TestIAMPermissionsResponse # parseJSONList :: Value -> Parser [TestIAMPermissionsResponse] #
type Rep TestIAMPermissionsResponse #
type Rep TestIAMPermissionsResponse = D1 (MetaData "TestIAMPermissionsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "TestIAMPermissionsResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_tiamprPermissions") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe [Text]))))

testIAMPermissionsResponse :: TestIAMPermissionsResponse #

Creates a value of TestIAMPermissionsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

tiamprPermissions

tiamprPermissions :: Lens' TestIAMPermissionsResponse [Text] #

A subset of `TestPermissionsRequest.permissions` that the caller is allowed.

ListDataSetsResponse

data ListDataSetsResponse #

The dataset list response.

See: listDataSetsResponse smart constructor.

Instances

Eq ListDataSetsResponse #
Methods (==) :: ListDataSetsResponse -> ListDataSetsResponse -> Bool # (/=) :: ListDataSetsResponse -> ListDataSetsResponse -> Bool #
Data ListDataSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ListDataSetsResponse -> c ListDataSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ListDataSetsResponse # toConstr :: ListDataSetsResponse -> Constr # dataTypeOf :: ListDataSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ListDataSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ListDataSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> ListDataSetsResponse -> ListDataSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ListDataSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ListDataSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> ListDataSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ListDataSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ListDataSetsResponse -> m ListDataSetsResponse #
Show ListDataSetsResponse #
Methods showsPrec :: Int -> ListDataSetsResponse -> ShowS # show :: ListDataSetsResponse -> String # showList :: [ListDataSetsResponse] -> ShowS #
Generic ListDataSetsResponse #
Associated Types type Rep ListDataSetsResponse :: * -> * # Methods from :: ListDataSetsResponse -> Rep ListDataSetsResponse x # to :: Rep ListDataSetsResponse x -> ListDataSetsResponse #
ToJSON ListDataSetsResponse #
Methods toJSON :: ListDataSetsResponse -> Value # toEncoding :: ListDataSetsResponse -> Encoding # toJSONList :: [ListDataSetsResponse] -> Value # toEncodingList :: [ListDataSetsResponse] -> Encoding #
FromJSON ListDataSetsResponse #
Methods parseJSON :: Value -> Parser ListDataSetsResponse # parseJSONList :: Value -> Parser [ListDataSetsResponse] #
type Rep ListDataSetsResponse #
type Rep ListDataSetsResponse = D1 (MetaData "ListDataSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ListDataSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_ldsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ldsrDataSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [DataSet])))))

listDataSetsResponse :: ListDataSetsResponse #

Creates a value of ListDataSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ldsrNextPageToken :: Lens' ListDataSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

ldsrDataSets :: Lens' ListDataSetsResponse [DataSet] #

The list of matching Datasets.

ImportReadGroupSetsRequest

data ImportReadGroupSetsRequest #

The read group set import request.

See: importReadGroupSetsRequest smart constructor.

Instances

Eq ImportReadGroupSetsRequest #
Methods (==) :: ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest -> Bool # (/=) :: ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest -> Bool #
Data ImportReadGroupSetsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportReadGroupSetsRequest -> c ImportReadGroupSetsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportReadGroupSetsRequest # toConstr :: ImportReadGroupSetsRequest -> Constr # dataTypeOf :: ImportReadGroupSetsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportReadGroupSetsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportReadGroupSetsRequest) # gmapT :: (forall b. Data b => b -> b) -> ImportReadGroupSetsRequest -> ImportReadGroupSetsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportReadGroupSetsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportReadGroupSetsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportReadGroupSetsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportReadGroupSetsRequest -> m ImportReadGroupSetsRequest #
Show ImportReadGroupSetsRequest #
Methods showsPrec :: Int -> ImportReadGroupSetsRequest -> ShowS # show :: ImportReadGroupSetsRequest -> String # showList :: [ImportReadGroupSetsRequest] -> ShowS #
Generic ImportReadGroupSetsRequest #
Associated Types type Rep ImportReadGroupSetsRequest :: * -> * # Methods from :: ImportReadGroupSetsRequest -> Rep ImportReadGroupSetsRequest x # to :: Rep ImportReadGroupSetsRequest x -> ImportReadGroupSetsRequest #
ToJSON ImportReadGroupSetsRequest #
Methods toJSON :: ImportReadGroupSetsRequest -> Value # toEncoding :: ImportReadGroupSetsRequest -> Encoding # toJSONList :: [ImportReadGroupSetsRequest] -> Value # toEncodingList :: [ImportReadGroupSetsRequest] -> Encoding #
FromJSON ImportReadGroupSetsRequest #
Methods parseJSON :: Value -> Parser ImportReadGroupSetsRequest # parseJSONList :: Value -> Parser [ImportReadGroupSetsRequest] #
type Rep ImportReadGroupSetsRequest #
type Rep ImportReadGroupSetsRequest = D1 (MetaData "ImportReadGroupSetsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ImportReadGroupSetsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_irgsrReferenceSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_irgsrDataSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_irgsrSourceURIs") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_irgsrPartitionStrategy") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportReadGroupSetsRequestPartitionStrategy))))))

importReadGroupSetsRequest :: ImportReadGroupSetsRequest #

Creates a value of ImportReadGroupSetsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

irgsrReferenceSetId :: Lens' ImportReadGroupSetsRequest (Maybe Text) #

The reference set to which the imported read group sets are aligned to, if any. The reference names of this reference set must be a superset of those found in the imported file headers. If no reference set id is provided, a best effort is made to associate with a matching reference set.

irgsrDataSetId :: Lens' ImportReadGroupSetsRequest (Maybe Text) #

Required. The ID of the dataset these read group sets will belong to. The caller must have WRITE permissions to this dataset.

irgsrSourceURIs :: Lens' ImportReadGroupSetsRequest [Text] #

A list of URIs pointing at BAM files in Google Cloud Storage. Those URIs can include wildcards (*), but do not add or remove matching files before import has completed. Note that Google Cloud Storage object listing is only eventually consistent: files added may be not be immediately visible to everyone. Thus, if using a wildcard it is preferable not to start the import immediately after the files are created.

irgsrPartitionStrategy :: Lens' ImportReadGroupSetsRequest (Maybe ImportReadGroupSetsRequestPartitionStrategy) #

The partition strategy describes how read groups are partitioned into read group sets.

ImportVariantsRequest

data ImportVariantsRequest #

The variant data import request.

See: importVariantsRequest smart constructor.

Instances

Eq ImportVariantsRequest #
Methods (==) :: ImportVariantsRequest -> ImportVariantsRequest -> Bool # (/=) :: ImportVariantsRequest -> ImportVariantsRequest -> Bool #
Data ImportVariantsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequest -> c ImportVariantsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequest # toConstr :: ImportVariantsRequest -> Constr # dataTypeOf :: ImportVariantsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequest) # gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequest -> ImportVariantsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequest -> m ImportVariantsRequest #
Show ImportVariantsRequest #
Methods showsPrec :: Int -> ImportVariantsRequest -> ShowS # show :: ImportVariantsRequest -> String # showList :: [ImportVariantsRequest] -> ShowS #
Generic ImportVariantsRequest #
Associated Types type Rep ImportVariantsRequest :: * -> * # Methods from :: ImportVariantsRequest -> Rep ImportVariantsRequest x # to :: Rep ImportVariantsRequest x -> ImportVariantsRequest #
ToJSON ImportVariantsRequest #
Methods toJSON :: ImportVariantsRequest -> Value # toEncoding :: ImportVariantsRequest -> Encoding # toJSONList :: [ImportVariantsRequest] -> Value # toEncodingList :: [ImportVariantsRequest] -> Encoding #
FromJSON ImportVariantsRequest #
Methods parseJSON :: Value -> Parser ImportVariantsRequest # parseJSONList :: Value -> Parser [ImportVariantsRequest] #
type Rep ImportVariantsRequest #
type Rep ImportVariantsRequest = D1 (MetaData "ImportVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ImportVariantsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_ivrVariantSetId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ivrFormat") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportVariantsRequestFormat)))) ((::) (S1 (MetaSel (Just Symbol "_ivrInfoMergeConfig") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ImportVariantsRequestInfoMergeConfig))) ((::) (S1 (MetaSel (Just Symbol "_ivrNormalizeReferenceNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) (S1 (MetaSel (Just Symbol "_ivrSourceURIs") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))))))

importVariantsRequest :: ImportVariantsRequest #

Creates a value of ImportVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ivrVariantSetId :: Lens' ImportVariantsRequest (Maybe Text) #

Required. The variant set to which variant data should be imported.

ivrFormat :: Lens' ImportVariantsRequest (Maybe ImportVariantsRequestFormat) #

The format of the variant data being imported. If unspecified, defaults to to `VCF`.

ivrInfoMergeConfig :: Lens' ImportVariantsRequest (Maybe ImportVariantsRequestInfoMergeConfig) #

A mapping between info field keys and the InfoMergeOperations to be performed on them. This is plumbed down to the MergeVariantRequests generated by the resulting import job.

ivrNormalizeReferenceNames :: Lens' ImportVariantsRequest (Maybe Bool) #

Convert reference names to the canonical representation. hg19 haploytypes (those reference names containing "_hap") are not modified in any way. All other reference names are modified according to the following rules: The reference name is capitalized. The "chr" prefix is dropped for all autosomes and sex chromsomes. For example "chr17" becomes "17" and "chrX" becomes "X". All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".

ivrSourceURIs :: Lens' ImportVariantsRequest [Text] #

A list of URIs referencing variant files in Google Cloud Storage. URIs can include wildcards as described here. Note that recursive wildcards ('**') are not supported.

ExternalId

data ExternalId #

Instances

Eq ExternalId #
Methods (==) :: ExternalId -> ExternalId -> Bool # (/=) :: ExternalId -> ExternalId -> Bool #
Data ExternalId #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExternalId -> c ExternalId # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExternalId # toConstr :: ExternalId -> Constr # dataTypeOf :: ExternalId -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ExternalId) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExternalId) # gmapT :: (forall b. Data b => b -> b) -> ExternalId -> ExternalId # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExternalId -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExternalId -> r # gmapQ :: (forall d. Data d => d -> u) -> ExternalId -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ExternalId -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExternalId -> m ExternalId #
Show ExternalId #
Methods showsPrec :: Int -> ExternalId -> ShowS # show :: ExternalId -> String # showList :: [ExternalId] -> ShowS #
Generic ExternalId #
Associated Types type Rep ExternalId :: * -> * # Methods from :: ExternalId -> Rep ExternalId x # to :: Rep ExternalId x -> ExternalId #
ToJSON ExternalId #
Methods toJSON :: ExternalId -> Value # toEncoding :: ExternalId -> Encoding # toJSONList :: [ExternalId] -> Value # toEncodingList :: [ExternalId] -> Encoding #
FromJSON ExternalId #
Methods parseJSON :: Value -> Parser ExternalId # parseJSONList :: Value -> Parser [ExternalId] #
type Rep ExternalId #
type Rep ExternalId = D1 (MetaData "ExternalId" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ExternalId'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_eiSourceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_eiId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

externalId :: ExternalId #

Creates a value of ExternalId with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

eiSourceName
eiId

eiSourceName :: Lens' ExternalId (Maybe Text) #

The name of the source of this data.

eiId :: Lens' ExternalId (Maybe Text) #

The id used by the source of this data.

CigarUnit

data CigarUnit #

A single CIGAR operation.

See: cigarUnit smart constructor.

Instances

Eq CigarUnit #
Methods (==) :: CigarUnit -> CigarUnit -> Bool # (/=) :: CigarUnit -> CigarUnit -> Bool #
Data CigarUnit #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CigarUnit -> c CigarUnit # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CigarUnit # toConstr :: CigarUnit -> Constr # dataTypeOf :: CigarUnit -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CigarUnit) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CigarUnit) # gmapT :: (forall b. Data b => b -> b) -> CigarUnit -> CigarUnit # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnit -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CigarUnit -> r # gmapQ :: (forall d. Data d => d -> u) -> CigarUnit -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CigarUnit -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CigarUnit -> m CigarUnit #
Show CigarUnit #
Methods showsPrec :: Int -> CigarUnit -> ShowS # show :: CigarUnit -> String # showList :: [CigarUnit] -> ShowS #
Generic CigarUnit #
Associated Types type Rep CigarUnit :: * -> * # Methods from :: CigarUnit -> Rep CigarUnit x # to :: Rep CigarUnit x -> CigarUnit #
ToJSON CigarUnit #
Methods toJSON :: CigarUnit -> Value # toEncoding :: CigarUnit -> Encoding # toJSONList :: [CigarUnit] -> Value # toEncodingList :: [CigarUnit] -> Encoding #
FromJSON CigarUnit #
Methods parseJSON :: Value -> Parser CigarUnit # parseJSONList :: Value -> Parser [CigarUnit] #
type Rep CigarUnit #
type Rep CigarUnit = D1 (MetaData "CigarUnit" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "CigarUnit'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_cuOperation") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CigarUnitOperation))) ((::) (S1 (MetaSel (Just Symbol "_cuOperationLength") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_cuReferenceSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

cigarUnit :: CigarUnit #

Creates a value of CigarUnit with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

cuOperation :: Lens' CigarUnit (Maybe CigarUnitOperation) #

cuOperationLength :: Lens' CigarUnit (Maybe Int64) #

The number of genomic bases that the operation runs for. Required.

cuReferenceSequence :: Lens' CigarUnit (Maybe Text) #

`referenceSequence` is only used at mismatches (`SEQUENCE_MISMATCH`) and deletions (`DELETE`). Filling this field replaces SAM's MD tag. If the relevant information is not available, this field is unset.

Policy

data Policy #

Defines an Identity and Access Management (IAM) policy. It is used to specify access control policies for Cloud Platform resources. A `Policy` consists of a list of `bindings`. A `Binding` binds a list of `members` to a `role`, where the members can be user accounts, Google groups, Google domains, and service accounts. A `role` is a named list of permissions defined by IAM. **Example** { "bindings": [ { "role": "roles/owner", "members": [ "user:mike'example.com", "group:admins'example.com", "domain:google.com", "serviceAccount:my-other-app'appspot.gserviceaccount.com", ] }, { "role": "roles/viewer", "members": ["user:sean'example.com"] } ] } For a description of IAM and its features, see the IAM developer's guide.

See: policy smart constructor.

Instances

Eq Policy #
Methods (==) :: Policy -> Policy -> Bool # (/=) :: Policy -> Policy -> Bool #
Data Policy #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Policy -> c Policy # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Policy # toConstr :: Policy -> Constr # dataTypeOf :: Policy -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Policy) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Policy) # gmapT :: (forall b. Data b => b -> b) -> Policy -> Policy # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Policy -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Policy -> r # gmapQ :: (forall d. Data d => d -> u) -> Policy -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Policy -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Policy -> m Policy # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Policy -> m Policy # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Policy -> m Policy #
Show Policy #
Methods showsPrec :: Int -> Policy -> ShowS # show :: Policy -> String # showList :: [Policy] -> ShowS #
Generic Policy #
Associated Types type Rep Policy :: * -> * # Methods from :: Policy -> Rep Policy x # to :: Rep Policy x -> Policy #
ToJSON Policy #
Methods toJSON :: Policy -> Value # toEncoding :: Policy -> Encoding # toJSONList :: [Policy] -> Value # toEncodingList :: [Policy] -> Encoding #
FromJSON Policy #
Methods parseJSON :: Value -> Parser Policy # parseJSONList :: Value -> Parser [Policy] #
type Rep Policy #
type Rep Policy = D1 (MetaData "Policy" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Policy'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_polEtag") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bytes))) ((::) (S1 (MetaSel (Just Symbol "_polVersion") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_polBindings") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Binding]))))))

policy :: Policy #

Creates a value of Policy with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

polEtag :: Lens' Policy (Maybe ByteString) #

`etag` is used for optimistic concurrency control as a way to help prevent simultaneous updates of a policy from overwriting each other. It is strongly suggested that systems make use of the `etag` in the read-modify-write cycle to perform policy updates in order to avoid race conditions: An `etag` is returned in the response to `getIamPolicy`, and systems are expected to put that etag in the request to `setIamPolicy` to ensure that their change will be applied to the same version of the policy. If no `etag` is provided in the call to `setIamPolicy`, then the existing policy is overwritten blindly.

polVersion :: Lens' Policy (Maybe Int32) #

Version of the `Policy`. The default version is 0.

polBindings :: Lens' Policy [Binding] #

Associates a list of `members` to a `role`. Multiple `bindings` must not be specified for the same `role`. `bindings` with no members will result in an error.

ExportVariantSetRequest

data ExportVariantSetRequest #

The variant data export request.

See: exportVariantSetRequest smart constructor.

Instances

Eq ExportVariantSetRequest #
Methods (==) :: ExportVariantSetRequest -> ExportVariantSetRequest -> Bool # (/=) :: ExportVariantSetRequest -> ExportVariantSetRequest -> Bool #
Data ExportVariantSetRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportVariantSetRequest -> c ExportVariantSetRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportVariantSetRequest # toConstr :: ExportVariantSetRequest -> Constr # dataTypeOf :: ExportVariantSetRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ExportVariantSetRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportVariantSetRequest) # gmapT :: (forall b. Data b => b -> b) -> ExportVariantSetRequest -> ExportVariantSetRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> ExportVariantSetRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportVariantSetRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequest -> m ExportVariantSetRequest #
Show ExportVariantSetRequest #
Methods showsPrec :: Int -> ExportVariantSetRequest -> ShowS # show :: ExportVariantSetRequest -> String # showList :: [ExportVariantSetRequest] -> ShowS #
Generic ExportVariantSetRequest #
Associated Types type Rep ExportVariantSetRequest :: * -> * # Methods from :: ExportVariantSetRequest -> Rep ExportVariantSetRequest x # to :: Rep ExportVariantSetRequest x -> ExportVariantSetRequest #
ToJSON ExportVariantSetRequest #
Methods toJSON :: ExportVariantSetRequest -> Value # toEncoding :: ExportVariantSetRequest -> Encoding # toJSONList :: [ExportVariantSetRequest] -> Value # toEncodingList :: [ExportVariantSetRequest] -> Encoding #
FromJSON ExportVariantSetRequest #
Methods parseJSON :: Value -> Parser ExportVariantSetRequest # parseJSONList :: Value -> Parser [ExportVariantSetRequest] #
type Rep ExportVariantSetRequest #
type Rep ExportVariantSetRequest = D1 (MetaData "ExportVariantSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ExportVariantSetRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_evsrBigQueryDataSet") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_evsrBigQueryTable") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_evsrFormat") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe ExportVariantSetRequestFormat))) ((::) (S1 (MetaSel (Just Symbol "_evsrCallSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_evsrProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

exportVariantSetRequest :: ExportVariantSetRequest #

Creates a value of ExportVariantSetRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

evsrBigQueryDataSet :: Lens' ExportVariantSetRequest (Maybe Text) #

Required. The BigQuery dataset to export data to. This dataset must already exist. Note that this is distinct from the Genomics concept of "dataset".

evsrBigQueryTable :: Lens' ExportVariantSetRequest (Maybe Text) #

Required. The BigQuery table to export data to. If the table doesn't exist, it will be created. If it already exists, it will be overwritten.

evsrFormat :: Lens' ExportVariantSetRequest (Maybe ExportVariantSetRequestFormat) #

The format for the exported data.

evsrCallSetIds :: Lens' ExportVariantSetRequest [Text] #

If provided, only variant call information from the specified call sets will be exported. By default all variant calls are exported.

evsrProjectId :: Lens' ExportVariantSetRequest (Maybe Text) #

Required. The Google Cloud project ID that owns the destination BigQuery dataset. The caller must have WRITE access to this project. This project will also own the resulting export job.

VariantAnnotationType

data VariantAnnotationType #

Type has been adapted from ClinVar's list of variant types.

Constructors

VATTypeUnspecified	TYPE_UNSPECIFIED
VATTypeOther	`TYPE_OTHER` `TYPE_OTHER` should be used when no other Type will suffice. Further explanation of the variant type may be included in the info field.
VATInsertion	`INSERTION` `INSERTION` indicates an insertion.
VATDeletion	`DELETION` `DELETION` indicates a deletion.
VATSubstitution	`SUBSTITUTION` `SUBSTITUTION` indicates a block substitution of two or more nucleotides.
VATSnp	`SNP` `SNP` indicates a single nucleotide polymorphism.
VATStructural	`STRUCTURAL` `STRUCTURAL` indicates a large structural variant, including chromosomal fusions, inversions, etc.
VATCnv	`CNV` `CNV` indicates a variation in copy number.

Instances

Enum VariantAnnotationType #
Methods succ :: VariantAnnotationType -> VariantAnnotationType # pred :: VariantAnnotationType -> VariantAnnotationType # toEnum :: Int -> VariantAnnotationType # fromEnum :: VariantAnnotationType -> Int # enumFrom :: VariantAnnotationType -> [VariantAnnotationType] # enumFromThen :: VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType] # enumFromTo :: VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType] # enumFromThenTo :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType -> [VariantAnnotationType] #
Eq VariantAnnotationType #
Methods (==) :: VariantAnnotationType -> VariantAnnotationType -> Bool # (/=) :: VariantAnnotationType -> VariantAnnotationType -> Bool #
Data VariantAnnotationType #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantAnnotationType -> c VariantAnnotationType # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantAnnotationType # toConstr :: VariantAnnotationType -> Constr # dataTypeOf :: VariantAnnotationType -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantAnnotationType) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantAnnotationType) # gmapT :: (forall b. Data b => b -> b) -> VariantAnnotationType -> VariantAnnotationType # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationType -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantAnnotationType -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantAnnotationType -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantAnnotationType -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantAnnotationType -> m VariantAnnotationType #
Ord VariantAnnotationType #
Methods compare :: VariantAnnotationType -> VariantAnnotationType -> Ordering # (<) :: VariantAnnotationType -> VariantAnnotationType -> Bool # (<=) :: VariantAnnotationType -> VariantAnnotationType -> Bool # (>) :: VariantAnnotationType -> VariantAnnotationType -> Bool # (>=) :: VariantAnnotationType -> VariantAnnotationType -> Bool # max :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType # min :: VariantAnnotationType -> VariantAnnotationType -> VariantAnnotationType #
Read VariantAnnotationType #
Methods readsPrec :: Int -> ReadS VariantAnnotationType # readList :: ReadS [VariantAnnotationType] # readPrec :: ReadPrec VariantAnnotationType # readListPrec :: ReadPrec [VariantAnnotationType] #
Show VariantAnnotationType #
Methods showsPrec :: Int -> VariantAnnotationType -> ShowS # show :: VariantAnnotationType -> String # showList :: [VariantAnnotationType] -> ShowS #
Generic VariantAnnotationType #
Associated Types type Rep VariantAnnotationType :: * -> * # Methods from :: VariantAnnotationType -> Rep VariantAnnotationType x # to :: Rep VariantAnnotationType x -> VariantAnnotationType #
Hashable VariantAnnotationType #
Methods hashWithSalt :: Int -> VariantAnnotationType -> Int # hash :: VariantAnnotationType -> Int #
ToJSON VariantAnnotationType #
Methods toJSON :: VariantAnnotationType -> Value # toEncoding :: VariantAnnotationType -> Encoding # toJSONList :: [VariantAnnotationType] -> Value # toEncodingList :: [VariantAnnotationType] -> Encoding #
FromJSON VariantAnnotationType #
Methods parseJSON :: Value -> Parser VariantAnnotationType # parseJSONList :: Value -> Parser [VariantAnnotationType] #
FromHttpApiData VariantAnnotationType #
Methods parseUrlPiece :: Text -> Either Text VariantAnnotationType # parseHeader :: ByteString -> Either Text VariantAnnotationType # parseQueryParam :: Text -> Either Text VariantAnnotationType #
ToHttpApiData VariantAnnotationType #
Methods toUrlPiece :: VariantAnnotationType -> Text # toEncodedUrlPiece :: VariantAnnotationType -> Builder # toHeader :: VariantAnnotationType -> ByteString # toQueryParam :: VariantAnnotationType -> Text #
type Rep VariantAnnotationType #
type Rep VariantAnnotationType = D1 (MetaData "VariantAnnotationType" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) ((:+:) ((:+:) (C1 (MetaCons "VATTypeUnspecified" PrefixI False) U1) (C1 (MetaCons "VATTypeOther" PrefixI False) U1)) ((:+:) (C1 (MetaCons "VATInsertion" PrefixI False) U1) (C1 (MetaCons "VATDeletion" PrefixI False) U1))) ((:+:) ((:+:) (C1 (MetaCons "VATSubstitution" PrefixI False) U1) (C1 (MetaCons "VATSnp" PrefixI False) U1)) ((:+:) (C1 (MetaCons "VATStructural" PrefixI False) U1) (C1 (MetaCons "VATCnv" PrefixI False) U1))))

OperationMetadata

data OperationMetadata #

Metadata describing an Operation.

See: operationMetadata smart constructor.

Instances

Eq OperationMetadata #
Methods (==) :: OperationMetadata -> OperationMetadata -> Bool # (/=) :: OperationMetadata -> OperationMetadata -> Bool #
Data OperationMetadata #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationMetadata -> c OperationMetadata # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationMetadata # toConstr :: OperationMetadata -> Constr # dataTypeOf :: OperationMetadata -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationMetadata) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationMetadata) # gmapT :: (forall b. Data b => b -> b) -> OperationMetadata -> OperationMetadata # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadata -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationMetadata -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationMetadata -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationMetadata -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationMetadata -> m OperationMetadata #
Show OperationMetadata #
Methods showsPrec :: Int -> OperationMetadata -> ShowS # show :: OperationMetadata -> String # showList :: [OperationMetadata] -> ShowS #
Generic OperationMetadata #
Associated Types type Rep OperationMetadata :: * -> * # Methods from :: OperationMetadata -> Rep OperationMetadata x # to :: Rep OperationMetadata x -> OperationMetadata #
ToJSON OperationMetadata #
Methods toJSON :: OperationMetadata -> Value # toEncoding :: OperationMetadata -> Encoding # toJSONList :: [OperationMetadata] -> Value # toEncodingList :: [OperationMetadata] -> Encoding #
FromJSON OperationMetadata #
Methods parseJSON :: Value -> Parser OperationMetadata # parseJSONList :: Value -> Parser [OperationMetadata] #
type Rep OperationMetadata #
type Rep OperationMetadata = D1 (MetaData "OperationMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "OperationMetadata'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_omClientId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_omStartTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime')))) ((::) (S1 (MetaSel (Just Symbol "_omEvents") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [OperationEvent]))) (S1 (MetaSel (Just Symbol "_omEndTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_omLabels") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataLabels))) (S1 (MetaSel (Just Symbol "_omProjectId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_omCreateTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) ((::) (S1 (MetaSel (Just Symbol "_omRuntimeMetadata") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataRuntimeMetadata))) (S1 (MetaSel (Just Symbol "_omRequest") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe OperationMetadataRequest))))))))

operationMetadata :: OperationMetadata #

Creates a value of OperationMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

omClientId :: Lens' OperationMetadata (Maybe Text) #

This field is deprecated. Use `labels` instead. Optionally provided by the caller when submitting the request that creates the operation.

omStartTime :: Lens' OperationMetadata (Maybe UTCTime) #

The time at which the job began to run.

omEvents :: Lens' OperationMetadata [OperationEvent] #

Optional event messages that were generated during the job's execution. This also contains any warnings that were generated during import or export.

omEndTime :: Lens' OperationMetadata (Maybe UTCTime) #

The time at which the job stopped running.

omLabels :: Lens' OperationMetadata (Maybe OperationMetadataLabels) #

Optionally provided by the caller when submitting the request that creates the operation.

omProjectId :: Lens' OperationMetadata (Maybe Text) #

The Google Cloud Project in which the job is scoped.

omCreateTime :: Lens' OperationMetadata (Maybe UTCTime) #

The time at which the job was submitted to the Genomics service.

omRuntimeMetadata :: Lens' OperationMetadata (Maybe OperationMetadataRuntimeMetadata) #

Runtime metadata on this Operation.

omRequest :: Lens' OperationMetadata (Maybe OperationMetadataRequest) #

The original request that started the operation. Note that this will be in current version of the API. If the operation was started with v1beta2 API and a GetOperation is performed on v1 API, a v1 request will be returned.

ImportVariantsRequestFormat

data ImportVariantsRequestFormat #

The format of the variant data being imported. If unspecified, defaults to to `VCF`.

Constructors

FormatUnspecified	FORMAT_UNSPECIFIED
FormatVcf	`FORMAT_VCF` VCF (Variant Call Format). The VCF files may be gzip compressed. gVCF is also supported.
FormatCompleteGenomics	`FORMAT_COMPLETE_GENOMICS` Complete Genomics masterVarBeta format. The masterVarBeta files may be bzip2 compressed.

Instances

Enum ImportVariantsRequestFormat #
Methods succ :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat # pred :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat # toEnum :: Int -> ImportVariantsRequestFormat # fromEnum :: ImportVariantsRequestFormat -> Int # enumFrom :: ImportVariantsRequestFormat -> [ImportVariantsRequestFormat] # enumFromThen :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat] # enumFromTo :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat] # enumFromThenTo :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> [ImportVariantsRequestFormat] #
Eq ImportVariantsRequestFormat #
Methods (==) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool # (/=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool #
Data ImportVariantsRequestFormat #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ImportVariantsRequestFormat -> c ImportVariantsRequestFormat # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ImportVariantsRequestFormat # toConstr :: ImportVariantsRequestFormat -> Constr # dataTypeOf :: ImportVariantsRequestFormat -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ImportVariantsRequestFormat) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ImportVariantsRequestFormat) # gmapT :: (forall b. Data b => b -> b) -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestFormat -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ImportVariantsRequestFormat -> r # gmapQ :: (forall d. Data d => d -> u) -> ImportVariantsRequestFormat -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ImportVariantsRequestFormat -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ImportVariantsRequestFormat -> m ImportVariantsRequestFormat #
Ord ImportVariantsRequestFormat #
Methods compare :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Ordering # (<) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool # (<=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool # (>) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool # (>=) :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> Bool # max :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat # min :: ImportVariantsRequestFormat -> ImportVariantsRequestFormat -> ImportVariantsRequestFormat #
Read ImportVariantsRequestFormat #
Methods readsPrec :: Int -> ReadS ImportVariantsRequestFormat # readList :: ReadS [ImportVariantsRequestFormat] # readPrec :: ReadPrec ImportVariantsRequestFormat # readListPrec :: ReadPrec [ImportVariantsRequestFormat] #
Show ImportVariantsRequestFormat #
Methods showsPrec :: Int -> ImportVariantsRequestFormat -> ShowS # show :: ImportVariantsRequestFormat -> String # showList :: [ImportVariantsRequestFormat] -> ShowS #
Generic ImportVariantsRequestFormat #
Associated Types type Rep ImportVariantsRequestFormat :: * -> * # Methods from :: ImportVariantsRequestFormat -> Rep ImportVariantsRequestFormat x # to :: Rep ImportVariantsRequestFormat x -> ImportVariantsRequestFormat #
Hashable ImportVariantsRequestFormat #
Methods hashWithSalt :: Int -> ImportVariantsRequestFormat -> Int # hash :: ImportVariantsRequestFormat -> Int #
ToJSON ImportVariantsRequestFormat #
Methods toJSON :: ImportVariantsRequestFormat -> Value # toEncoding :: ImportVariantsRequestFormat -> Encoding # toJSONList :: [ImportVariantsRequestFormat] -> Value # toEncodingList :: [ImportVariantsRequestFormat] -> Encoding #
FromJSON ImportVariantsRequestFormat #
Methods parseJSON :: Value -> Parser ImportVariantsRequestFormat # parseJSONList :: Value -> Parser [ImportVariantsRequestFormat] #
FromHttpApiData ImportVariantsRequestFormat #
Methods parseUrlPiece :: Text -> Either Text ImportVariantsRequestFormat # parseHeader :: ByteString -> Either Text ImportVariantsRequestFormat # parseQueryParam :: Text -> Either Text ImportVariantsRequestFormat #
ToHttpApiData ImportVariantsRequestFormat #
Methods toUrlPiece :: ImportVariantsRequestFormat -> Text # toEncodedUrlPiece :: ImportVariantsRequestFormat -> Builder # toHeader :: ImportVariantsRequestFormat -> ByteString # toQueryParam :: ImportVariantsRequestFormat -> Text #
type Rep ImportVariantsRequestFormat #
type Rep ImportVariantsRequestFormat = D1 (MetaData "ImportVariantsRequestFormat" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) (C1 (MetaCons "FormatUnspecified" PrefixI False) U1) ((:+:) (C1 (MetaCons "FormatVcf" PrefixI False) U1) (C1 (MetaCons "FormatCompleteGenomics" PrefixI False) U1)))

SearchAnnotationsRequest

data SearchAnnotationsRequest #

Instances

Eq SearchAnnotationsRequest #
Methods (==) :: SearchAnnotationsRequest -> SearchAnnotationsRequest -> Bool # (/=) :: SearchAnnotationsRequest -> SearchAnnotationsRequest -> Bool #
Data SearchAnnotationsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationsRequest -> c SearchAnnotationsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationsRequest # toConstr :: SearchAnnotationsRequest -> Constr # dataTypeOf :: SearchAnnotationsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationsRequest -> SearchAnnotationsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationsRequest -> m SearchAnnotationsRequest #
Show SearchAnnotationsRequest #
Methods showsPrec :: Int -> SearchAnnotationsRequest -> ShowS # show :: SearchAnnotationsRequest -> String # showList :: [SearchAnnotationsRequest] -> ShowS #
Generic SearchAnnotationsRequest #
Associated Types type Rep SearchAnnotationsRequest :: * -> * # Methods from :: SearchAnnotationsRequest -> Rep SearchAnnotationsRequest x # to :: Rep SearchAnnotationsRequest x -> SearchAnnotationsRequest #
ToJSON SearchAnnotationsRequest #
Methods toJSON :: SearchAnnotationsRequest -> Value # toEncoding :: SearchAnnotationsRequest -> Encoding # toJSONList :: [SearchAnnotationsRequest] -> Value # toEncodingList :: [SearchAnnotationsRequest] -> Encoding #
FromJSON SearchAnnotationsRequest #
Methods parseJSON :: Value -> Parser SearchAnnotationsRequest # parseJSONList :: Value -> Parser [SearchAnnotationsRequest] #
type Rep SearchAnnotationsRequest #
type Rep SearchAnnotationsRequest = D1 (MetaData "SearchAnnotationsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchAnnotationsRequest'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_sarStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) ((::) (S1 (MetaSel (Just Symbol "_sarReferenceId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sarReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_sarEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_sarPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_sarAnnotationSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_sarPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32))))))))

searchAnnotationsRequest :: SearchAnnotationsRequest #

Creates a value of SearchAnnotationsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sarStart :: Lens' SearchAnnotationsRequest (Maybe Int64) #

The start position of the range on the reference, 0-based inclusive. If specified, referenceId or referenceName must be specified. Defaults to 0.

sarReferenceId :: Lens' SearchAnnotationsRequest (Maybe Text) #

The ID of the reference to query.

sarReferenceName :: Lens' SearchAnnotationsRequest (Maybe Text) #

The name of the reference to query, within the reference set associated with this query.

sarEnd :: Lens' SearchAnnotationsRequest (Maybe Int64) #

The end position of the range on the reference, 0-based exclusive. If referenceId or referenceName must be specified, Defaults to the length of the reference.

sarPageToken :: Lens' SearchAnnotationsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

sarAnnotationSetIds :: Lens' SearchAnnotationsRequest [Text] #

Required. The annotation sets to search within. The caller must have `READ` access to these annotation sets. All queried annotation sets must have the same type.

sarPageSize :: Lens' SearchAnnotationsRequest (Maybe Int32) #

The maximum number of results to return in a single page. If unspecified, defaults to 256. The maximum value is 2048.

SearchVariantSetsResponse

data SearchVariantSetsResponse #

The search variant sets response.

See: searchVariantSetsResponse smart constructor.

Instances

Eq SearchVariantSetsResponse #
Methods (==) :: SearchVariantSetsResponse -> SearchVariantSetsResponse -> Bool # (/=) :: SearchVariantSetsResponse -> SearchVariantSetsResponse -> Bool #
Data SearchVariantSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantSetsResponse -> c SearchVariantSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantSetsResponse # toConstr :: SearchVariantSetsResponse -> Constr # dataTypeOf :: SearchVariantSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchVariantSetsResponse -> SearchVariantSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchVariantSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantSetsResponse -> m SearchVariantSetsResponse #
Show SearchVariantSetsResponse #
Methods showsPrec :: Int -> SearchVariantSetsResponse -> ShowS # show :: SearchVariantSetsResponse -> String # showList :: [SearchVariantSetsResponse] -> ShowS #
Generic SearchVariantSetsResponse #
Associated Types type Rep SearchVariantSetsResponse :: * -> * # Methods from :: SearchVariantSetsResponse -> Rep SearchVariantSetsResponse x # to :: Rep SearchVariantSetsResponse x -> SearchVariantSetsResponse #
ToJSON SearchVariantSetsResponse #
Methods toJSON :: SearchVariantSetsResponse -> Value # toEncoding :: SearchVariantSetsResponse -> Encoding # toJSONList :: [SearchVariantSetsResponse] -> Value # toEncodingList :: [SearchVariantSetsResponse] -> Encoding #
FromJSON SearchVariantSetsResponse #
Methods parseJSON :: Value -> Parser SearchVariantSetsResponse # parseJSONList :: Value -> Parser [SearchVariantSetsResponse] #
type Rep SearchVariantSetsResponse #
type Rep SearchVariantSetsResponse = D1 (MetaData "SearchVariantSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchVariantSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_svsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svsrVariantSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [VariantSet])))))

searchVariantSetsResponse :: SearchVariantSetsResponse #

Creates a value of SearchVariantSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

svsrNextPageToken :: Lens' SearchVariantSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

svsrVariantSets :: Lens' SearchVariantSetsResponse [VariantSet] #

The variant sets belonging to the requested dataset.

SearchVariantsRequest

data SearchVariantsRequest #

The variant search request.

See: searchVariantsRequest smart constructor.

Instances

Eq SearchVariantsRequest #
Methods (==) :: SearchVariantsRequest -> SearchVariantsRequest -> Bool # (/=) :: SearchVariantsRequest -> SearchVariantsRequest -> Bool #
Data SearchVariantsRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchVariantsRequest -> c SearchVariantsRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchVariantsRequest # toConstr :: SearchVariantsRequest -> Constr # dataTypeOf :: SearchVariantsRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchVariantsRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchVariantsRequest) # gmapT :: (forall b. Data b => b -> b) -> SearchVariantsRequest -> SearchVariantsRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchVariantsRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchVariantsRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchVariantsRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchVariantsRequest -> m SearchVariantsRequest #
Show SearchVariantsRequest #
Methods showsPrec :: Int -> SearchVariantsRequest -> ShowS # show :: SearchVariantsRequest -> String # showList :: [SearchVariantsRequest] -> ShowS #
Generic SearchVariantsRequest #
Associated Types type Rep SearchVariantsRequest :: * -> * # Methods from :: SearchVariantsRequest -> Rep SearchVariantsRequest x # to :: Rep SearchVariantsRequest x -> SearchVariantsRequest #
ToJSON SearchVariantsRequest #
Methods toJSON :: SearchVariantsRequest -> Value # toEncoding :: SearchVariantsRequest -> Encoding # toJSONList :: [SearchVariantsRequest] -> Value # toEncodingList :: [SearchVariantsRequest] -> Encoding #
FromJSON SearchVariantsRequest #
Methods parseJSON :: Value -> Parser SearchVariantsRequest # parseJSONList :: Value -> Parser [SearchVariantsRequest] #
type Rep SearchVariantsRequest #
type Rep SearchVariantsRequest = D1 (MetaData "SearchVariantsRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchVariantsRequest'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_svrStart") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_svrCallSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((::) (S1 (MetaSel (Just Symbol "_svrReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_svrEnd") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_svrMaxCalls") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))) (S1 (MetaSel (Just Symbol "_svrPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((::) (S1 (MetaSel (Just Symbol "_svrVariantName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_svrVariantSetIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_svrPageSize") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))))))

searchVariantsRequest :: SearchVariantsRequest #

Creates a value of SearchVariantsRequest with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

svrStart :: Lens' SearchVariantsRequest (Maybe Int64) #

The beginning of the window (0-based, inclusive) for which overlapping variants should be returned. If unspecified, defaults to 0.

svrCallSetIds :: Lens' SearchVariantsRequest [Text] #

Only return variant calls which belong to call sets with these ids. Leaving this blank returns all variant calls. If a variant has no calls belonging to any of these call sets, it won't be returned at all.

svrReferenceName :: Lens' SearchVariantsRequest (Maybe Text) #

Required. Only return variants in this reference sequence.

svrEnd :: Lens' SearchVariantsRequest (Maybe Int64) #

The end of the window, 0-based exclusive. If unspecified or 0, defaults to the length of the reference.

svrMaxCalls :: Lens' SearchVariantsRequest (Maybe Int32) #

The maximum number of calls to return in a single page. Note that this limit may be exceeded in the event that a matching variant contains more calls than the requested maximum. If unspecified, defaults to 5000. The maximum value is 10000.

svrPageToken :: Lens' SearchVariantsRequest (Maybe Text) #

The continuation token, which is used to page through large result sets. To get the next page of results, set this parameter to the value of `nextPageToken` from the previous response.

svrVariantName :: Lens' SearchVariantsRequest (Maybe Text) #

Only return variants which have exactly this name.

svrVariantSetIds :: Lens' SearchVariantsRequest [Text] #

At most one variant set ID must be provided. Only variants from this variant set will be returned. If omitted, a call set id must be included in the request.

svrPageSize :: Lens' SearchVariantsRequest (Maybe Int32) #

The maximum number of variants to return in a single page. If unspecified, defaults to 5000. The maximum value is 10000.

ExportVariantSetRequestFormat

data ExportVariantSetRequestFormat #

The format for the exported data.

Constructors

EVSRFFormatUnspecified	FORMAT_UNSPECIFIED
EVSRFFormatBigQuery	`FORMAT_BIGQUERY` Export the data to Google BigQuery.

Instances

Enum ExportVariantSetRequestFormat #
Methods succ :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat # pred :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat # toEnum :: Int -> ExportVariantSetRequestFormat # fromEnum :: ExportVariantSetRequestFormat -> Int # enumFrom :: ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat] # enumFromThen :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat] # enumFromTo :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat] # enumFromThenTo :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> [ExportVariantSetRequestFormat] #
Eq ExportVariantSetRequestFormat #
Methods (==) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool # (/=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool #
Data ExportVariantSetRequestFormat #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ExportVariantSetRequestFormat -> c ExportVariantSetRequestFormat # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ExportVariantSetRequestFormat # toConstr :: ExportVariantSetRequestFormat -> Constr # dataTypeOf :: ExportVariantSetRequestFormat -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ExportVariantSetRequestFormat) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ExportVariantSetRequestFormat) # gmapT :: (forall b. Data b => b -> b) -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequestFormat -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ExportVariantSetRequestFormat -> r # gmapQ :: (forall d. Data d => d -> u) -> ExportVariantSetRequestFormat -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ExportVariantSetRequestFormat -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ExportVariantSetRequestFormat -> m ExportVariantSetRequestFormat #
Ord ExportVariantSetRequestFormat #
Methods compare :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Ordering # (<) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool # (<=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool # (>) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool # (>=) :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> Bool # max :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat # min :: ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat -> ExportVariantSetRequestFormat #
Read ExportVariantSetRequestFormat #
Methods readsPrec :: Int -> ReadS ExportVariantSetRequestFormat # readList :: ReadS [ExportVariantSetRequestFormat] # readPrec :: ReadPrec ExportVariantSetRequestFormat # readListPrec :: ReadPrec [ExportVariantSetRequestFormat] #
Show ExportVariantSetRequestFormat #
Methods showsPrec :: Int -> ExportVariantSetRequestFormat -> ShowS # show :: ExportVariantSetRequestFormat -> String # showList :: [ExportVariantSetRequestFormat] -> ShowS #
Generic ExportVariantSetRequestFormat #
Associated Types type Rep ExportVariantSetRequestFormat :: * -> * # Methods from :: ExportVariantSetRequestFormat -> Rep ExportVariantSetRequestFormat x # to :: Rep ExportVariantSetRequestFormat x -> ExportVariantSetRequestFormat #
Hashable ExportVariantSetRequestFormat #
Methods hashWithSalt :: Int -> ExportVariantSetRequestFormat -> Int # hash :: ExportVariantSetRequestFormat -> Int #
ToJSON ExportVariantSetRequestFormat #
Methods toJSON :: ExportVariantSetRequestFormat -> Value # toEncoding :: ExportVariantSetRequestFormat -> Encoding # toJSONList :: [ExportVariantSetRequestFormat] -> Value # toEncodingList :: [ExportVariantSetRequestFormat] -> Encoding #
FromJSON ExportVariantSetRequestFormat #
Methods parseJSON :: Value -> Parser ExportVariantSetRequestFormat # parseJSONList :: Value -> Parser [ExportVariantSetRequestFormat] #
FromHttpApiData ExportVariantSetRequestFormat #
Methods parseUrlPiece :: Text -> Either Text ExportVariantSetRequestFormat # parseHeader :: ByteString -> Either Text ExportVariantSetRequestFormat # parseQueryParam :: Text -> Either Text ExportVariantSetRequestFormat #
ToHttpApiData ExportVariantSetRequestFormat #
Methods toUrlPiece :: ExportVariantSetRequestFormat -> Text # toEncodedUrlPiece :: ExportVariantSetRequestFormat -> Builder # toHeader :: ExportVariantSetRequestFormat -> ByteString # toQueryParam :: ExportVariantSetRequestFormat -> Text #
type Rep ExportVariantSetRequestFormat #
type Rep ExportVariantSetRequestFormat = D1 (MetaData "ExportVariantSetRequestFormat" "Network.Google.Genomics.Types.Sum" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) ((:+:) (C1 (MetaCons "EVSRFFormatUnspecified" PrefixI False) U1) (C1 (MetaCons "EVSRFFormatBigQuery" PrefixI False) U1))

AnnotationSetInfo

data AnnotationSetInfo #

A map of additional read alignment information. This must be of the form map (string key mapping to a list of string values).

See: annotationSetInfo smart constructor.

Instances

Eq AnnotationSetInfo #
Methods (==) :: AnnotationSetInfo -> AnnotationSetInfo -> Bool # (/=) :: AnnotationSetInfo -> AnnotationSetInfo -> Bool #
Data AnnotationSetInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> AnnotationSetInfo -> c AnnotationSetInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c AnnotationSetInfo # toConstr :: AnnotationSetInfo -> Constr # dataTypeOf :: AnnotationSetInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c AnnotationSetInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c AnnotationSetInfo) # gmapT :: (forall b. Data b => b -> b) -> AnnotationSetInfo -> AnnotationSetInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> AnnotationSetInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> AnnotationSetInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> AnnotationSetInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> AnnotationSetInfo -> m AnnotationSetInfo #
Show AnnotationSetInfo #
Methods showsPrec :: Int -> AnnotationSetInfo -> ShowS # show :: AnnotationSetInfo -> String # showList :: [AnnotationSetInfo] -> ShowS #
Generic AnnotationSetInfo #
Associated Types type Rep AnnotationSetInfo :: * -> * # Methods from :: AnnotationSetInfo -> Rep AnnotationSetInfo x # to :: Rep AnnotationSetInfo x -> AnnotationSetInfo #
ToJSON AnnotationSetInfo #
Methods toJSON :: AnnotationSetInfo -> Value # toEncoding :: AnnotationSetInfo -> Encoding # toJSONList :: [AnnotationSetInfo] -> Value # toEncodingList :: [AnnotationSetInfo] -> Encoding #
FromJSON AnnotationSetInfo #
Methods parseJSON :: Value -> Parser AnnotationSetInfo # parseJSONList :: Value -> Parser [AnnotationSetInfo] #
type Rep AnnotationSetInfo #
type Rep AnnotationSetInfo = D1 (MetaData "AnnotationSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "AnnotationSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_asiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

annotationSetInfo #

Arguments

:: HashMap Text [JSONValue]	`asiAddtional`
-> AnnotationSetInfo

Creates a value of AnnotationSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

asiAddtional

asiAddtional :: Lens' AnnotationSetInfo (HashMap Text [JSONValue]) #

ComputeEngine

data ComputeEngine #

Describes a Compute Engine resource that is being managed by a running pipeline.

See: computeEngine smart constructor.

Instances

Eq ComputeEngine #
Methods (==) :: ComputeEngine -> ComputeEngine -> Bool # (/=) :: ComputeEngine -> ComputeEngine -> Bool #
Data ComputeEngine #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ComputeEngine -> c ComputeEngine # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ComputeEngine # toConstr :: ComputeEngine -> Constr # dataTypeOf :: ComputeEngine -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ComputeEngine) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ComputeEngine) # gmapT :: (forall b. Data b => b -> b) -> ComputeEngine -> ComputeEngine # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ComputeEngine -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ComputeEngine -> r # gmapQ :: (forall d. Data d => d -> u) -> ComputeEngine -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ComputeEngine -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ComputeEngine -> m ComputeEngine #
Show ComputeEngine #
Methods showsPrec :: Int -> ComputeEngine -> ShowS # show :: ComputeEngine -> String # showList :: [ComputeEngine] -> ShowS #
Generic ComputeEngine #
Associated Types type Rep ComputeEngine :: * -> * # Methods from :: ComputeEngine -> Rep ComputeEngine x # to :: Rep ComputeEngine x -> ComputeEngine #
ToJSON ComputeEngine #
Methods toJSON :: ComputeEngine -> Value # toEncoding :: ComputeEngine -> Encoding # toJSONList :: [ComputeEngine] -> Value # toEncodingList :: [ComputeEngine] -> Encoding #
FromJSON ComputeEngine #
Methods parseJSON :: Value -> Parser ComputeEngine # parseJSONList :: Value -> Parser [ComputeEngine] #
type Rep ComputeEngine #
type Rep ComputeEngine = D1 (MetaData "ComputeEngine" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ComputeEngine'" PrefixI True) ((::) ((::) (S1 (MetaSel (Just Symbol "_ceZone") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ceDiskNames") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((:*:) (S1 (MetaSel (Just Symbol "_ceMachineType") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_ceInstanceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

computeEngine :: ComputeEngine #

Creates a value of ComputeEngine with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

ceZone :: Lens' ComputeEngine (Maybe Text) #

The availability zone in which the instance resides.

ceDiskNames :: Lens' ComputeEngine [Text] #

The names of the disks that were created for this pipeline.

ceMachineType :: Lens' ComputeEngine (Maybe Text) #

The machine type of the instance.

ceInstanceName :: Lens' ComputeEngine (Maybe Text) #

The instance on which the operation is running.

SearchAnnotationSetsResponse

data SearchAnnotationSetsResponse #

Instances

Eq SearchAnnotationSetsResponse #
Methods (==) :: SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse -> Bool # (/=) :: SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse -> Bool #
Data SearchAnnotationSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchAnnotationSetsResponse -> c SearchAnnotationSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchAnnotationSetsResponse # toConstr :: SearchAnnotationSetsResponse -> Constr # dataTypeOf :: SearchAnnotationSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchAnnotationSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchAnnotationSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchAnnotationSetsResponse -> SearchAnnotationSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchAnnotationSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchAnnotationSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchAnnotationSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchAnnotationSetsResponse -> m SearchAnnotationSetsResponse #
Show SearchAnnotationSetsResponse #
Methods showsPrec :: Int -> SearchAnnotationSetsResponse -> ShowS # show :: SearchAnnotationSetsResponse -> String # showList :: [SearchAnnotationSetsResponse] -> ShowS #
Generic SearchAnnotationSetsResponse #
Associated Types type Rep SearchAnnotationSetsResponse :: * -> * # Methods from :: SearchAnnotationSetsResponse -> Rep SearchAnnotationSetsResponse x # to :: Rep SearchAnnotationSetsResponse x -> SearchAnnotationSetsResponse #
ToJSON SearchAnnotationSetsResponse #
Methods toJSON :: SearchAnnotationSetsResponse -> Value # toEncoding :: SearchAnnotationSetsResponse -> Encoding # toJSONList :: [SearchAnnotationSetsResponse] -> Value # toEncodingList :: [SearchAnnotationSetsResponse] -> Encoding #
FromJSON SearchAnnotationSetsResponse #
Methods parseJSON :: Value -> Parser SearchAnnotationSetsResponse # parseJSONList :: Value -> Parser [SearchAnnotationSetsResponse] #
type Rep SearchAnnotationSetsResponse #
type Rep SearchAnnotationSetsResponse = D1 (MetaData "SearchAnnotationSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchAnnotationSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_sasrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_sasrAnnotationSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [AnnotationSet])))))

searchAnnotationSetsResponse :: SearchAnnotationSetsResponse #

Creates a value of SearchAnnotationSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

sasrNextPageToken :: Lens' SearchAnnotationSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

sasrAnnotationSets :: Lens' SearchAnnotationSetsResponse [AnnotationSet] #

The matching annotation sets.

CallSetInfo

data CallSetInfo #

A map of additional call set information. This must be of the form map (string key mapping to a list of string values).

See: callSetInfo smart constructor.

Instances

Eq CallSetInfo #
Methods (==) :: CallSetInfo -> CallSetInfo -> Bool # (/=) :: CallSetInfo -> CallSetInfo -> Bool #
Data CallSetInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> CallSetInfo -> c CallSetInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c CallSetInfo # toConstr :: CallSetInfo -> Constr # dataTypeOf :: CallSetInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c CallSetInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c CallSetInfo) # gmapT :: (forall b. Data b => b -> b) -> CallSetInfo -> CallSetInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> CallSetInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> CallSetInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> CallSetInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> CallSetInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> CallSetInfo -> m CallSetInfo #
Show CallSetInfo #
Methods showsPrec :: Int -> CallSetInfo -> ShowS # show :: CallSetInfo -> String # showList :: [CallSetInfo] -> ShowS #
Generic CallSetInfo #
Associated Types type Rep CallSetInfo :: * -> * # Methods from :: CallSetInfo -> Rep CallSetInfo x # to :: Rep CallSetInfo x -> CallSetInfo #
ToJSON CallSetInfo #
Methods toJSON :: CallSetInfo -> Value # toEncoding :: CallSetInfo -> Encoding # toJSONList :: [CallSetInfo] -> Value # toEncodingList :: [CallSetInfo] -> Encoding #
FromJSON CallSetInfo #
Methods parseJSON :: Value -> Parser CallSetInfo # parseJSONList :: Value -> Parser [CallSetInfo] #
type Rep CallSetInfo #
type Rep CallSetInfo = D1 (MetaData "CallSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "CallSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_csiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

callSetInfo #

Arguments

:: HashMap Text [JSONValue]	`csiAddtional`
-> CallSetInfo

Creates a value of CallSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

csiAddtional

csiAddtional :: Lens' CallSetInfo (HashMap Text [JSONValue]) #

VariantSetMetadataInfo

data VariantSetMetadataInfo #

Remaining structured metadata key-value pairs. This must be of the form map (string key mapping to a list of string values).

See: variantSetMetadataInfo smart constructor.

Instances

Eq VariantSetMetadataInfo #
Methods (==) :: VariantSetMetadataInfo -> VariantSetMetadataInfo -> Bool # (/=) :: VariantSetMetadataInfo -> VariantSetMetadataInfo -> Bool #
Data VariantSetMetadataInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> VariantSetMetadataInfo -> c VariantSetMetadataInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c VariantSetMetadataInfo # toConstr :: VariantSetMetadataInfo -> Constr # dataTypeOf :: VariantSetMetadataInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c VariantSetMetadataInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c VariantSetMetadataInfo) # gmapT :: (forall b. Data b => b -> b) -> VariantSetMetadataInfo -> VariantSetMetadataInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> VariantSetMetadataInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> VariantSetMetadataInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> VariantSetMetadataInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> VariantSetMetadataInfo -> m VariantSetMetadataInfo #
Show VariantSetMetadataInfo #
Methods showsPrec :: Int -> VariantSetMetadataInfo -> ShowS # show :: VariantSetMetadataInfo -> String # showList :: [VariantSetMetadataInfo] -> ShowS #
Generic VariantSetMetadataInfo #
Associated Types type Rep VariantSetMetadataInfo :: * -> * # Methods from :: VariantSetMetadataInfo -> Rep VariantSetMetadataInfo x # to :: Rep VariantSetMetadataInfo x -> VariantSetMetadataInfo #
ToJSON VariantSetMetadataInfo #
Methods toJSON :: VariantSetMetadataInfo -> Value # toEncoding :: VariantSetMetadataInfo -> Encoding # toJSONList :: [VariantSetMetadataInfo] -> Value # toEncodingList :: [VariantSetMetadataInfo] -> Encoding #
FromJSON VariantSetMetadataInfo #
Methods parseJSON :: Value -> Parser VariantSetMetadataInfo # parseJSONList :: Value -> Parser [VariantSetMetadataInfo] #
type Rep VariantSetMetadataInfo #
type Rep VariantSetMetadataInfo = D1 (MetaData "VariantSetMetadataInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "VariantSetMetadataInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_vsmiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

variantSetMetadataInfo #

Arguments

:: HashMap Text [JSONValue]	`vsmiAddtional`
-> VariantSetMetadataInfo

Creates a value of VariantSetMetadataInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

vsmiAddtional

vsmiAddtional :: Lens' VariantSetMetadataInfo (HashMap Text [JSONValue]) #

OperationResponse

data OperationResponse #

If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If importing Variants, an ImportVariantsResponse is returned. For pipelines and exports, an empty response is returned.

See: operationResponse smart constructor.

Instances

Eq OperationResponse #
Methods (==) :: OperationResponse -> OperationResponse -> Bool # (/=) :: OperationResponse -> OperationResponse -> Bool #
Data OperationResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationResponse -> c OperationResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationResponse # toConstr :: OperationResponse -> Constr # dataTypeOf :: OperationResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationResponse) # gmapT :: (forall b. Data b => b -> b) -> OperationResponse -> OperationResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationResponse -> m OperationResponse #
Show OperationResponse #
Methods showsPrec :: Int -> OperationResponse -> ShowS # show :: OperationResponse -> String # showList :: [OperationResponse] -> ShowS #
Generic OperationResponse #
Associated Types type Rep OperationResponse :: * -> * # Methods from :: OperationResponse -> Rep OperationResponse x # to :: Rep OperationResponse x -> OperationResponse #
ToJSON OperationResponse #
Methods toJSON :: OperationResponse -> Value # toEncoding :: OperationResponse -> Encoding # toJSONList :: [OperationResponse] -> Value # toEncodingList :: [OperationResponse] -> Encoding #
FromJSON OperationResponse #
Methods parseJSON :: Value -> Parser OperationResponse # parseJSONList :: Value -> Parser [OperationResponse] #
type Rep OperationResponse #
type Rep OperationResponse = D1 (MetaData "OperationResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "OperationResponse'" PrefixI True) (S1 (MetaSel (Just Symbol "_orAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text JSONValue))))

operationResponse #

Arguments

:: HashMap Text JSONValue	`orAddtional`
-> OperationResponse

Creates a value of OperationResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

orAddtional

orAddtional :: Lens' OperationResponse (HashMap Text JSONValue) #

Properties of the object. Contains field 'type with type URL.

Transcript

data Transcript #

A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.

See: transcript smart constructor.

Instances

Eq Transcript #
Methods (==) :: Transcript -> Transcript -> Bool # (/=) :: Transcript -> Transcript -> Bool #
Data Transcript #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Transcript -> c Transcript # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Transcript # toConstr :: Transcript -> Constr # dataTypeOf :: Transcript -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Transcript) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Transcript) # gmapT :: (forall b. Data b => b -> b) -> Transcript -> Transcript # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Transcript -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Transcript -> r # gmapQ :: (forall d. Data d => d -> u) -> Transcript -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Transcript -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Transcript -> m Transcript #
Show Transcript #
Methods showsPrec :: Int -> Transcript -> ShowS # show :: Transcript -> String # showList :: [Transcript] -> ShowS #
Generic Transcript #
Associated Types type Rep Transcript :: * -> * # Methods from :: Transcript -> Rep Transcript x # to :: Rep Transcript x -> Transcript #
ToJSON Transcript #
Methods toJSON :: Transcript -> Value # toEncoding :: Transcript -> Encoding # toJSONList :: [Transcript] -> Value # toEncodingList :: [Transcript] -> Encoding #
FromJSON Transcript #
Methods parseJSON :: Value -> Parser Transcript # parseJSONList :: Value -> Parser [Transcript] #
type Rep Transcript #
type Rep Transcript = D1 (MetaData "Transcript" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Transcript'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_tGeneId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) ((::) (S1 (MetaSel (Just Symbol "_tCodingSequence") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe CodingSequence))) (S1 (MetaSel (Just Symbol "_tExons") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Exon]))))))

transcript :: Transcript #

Creates a value of Transcript with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

tGeneId :: Lens' Transcript (Maybe Text) #

The annotation ID of the gene from which this transcript is transcribed.

tCodingSequence :: Lens' Transcript (Maybe CodingSequence) #

The range of the coding sequence for this transcript, if any. To determine the exact ranges of coding sequence, intersect this range with those of the exons, if any. If there are any exons, the codingSequence must start and end within them. Note that in some cases, the reference genome will not exactly match the observed mRNA transcript e.g. due to variance in the source genome from reference. In these cases, exon.frame will not necessarily match the expected reference reading frame and coding exon reference bases cannot necessarily be concatenated to produce the original transcript mRNA.

tExons :: Lens' Transcript [Exon] #

The exons that compose this transcript. This field should be unset for genomes where transcript splicing does not occur, for example prokaryotes. Introns are regions of the transcript that are not included in the spliced RNA product. Though not explicitly modeled here, intron ranges can be deduced; all regions of this transcript that are not exons are introns. Exonic sequences do not necessarily code for a translational product (amino acids). Only the regions of exons bounded by the codingSequence correspond to coding DNA sequence. Exons are ordered by start position and may not overlap.

OperationEvent

data OperationEvent #

An event that occurred during an Operation.

See: operationEvent smart constructor.

Instances

Eq OperationEvent #
Methods (==) :: OperationEvent -> OperationEvent -> Bool # (/=) :: OperationEvent -> OperationEvent -> Bool #
Data OperationEvent #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> OperationEvent -> c OperationEvent # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c OperationEvent # toConstr :: OperationEvent -> Constr # dataTypeOf :: OperationEvent -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c OperationEvent) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c OperationEvent) # gmapT :: (forall b. Data b => b -> b) -> OperationEvent -> OperationEvent # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> OperationEvent -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> OperationEvent -> r # gmapQ :: (forall d. Data d => d -> u) -> OperationEvent -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> OperationEvent -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> OperationEvent -> m OperationEvent #
Show OperationEvent #
Methods showsPrec :: Int -> OperationEvent -> ShowS # show :: OperationEvent -> String # showList :: [OperationEvent] -> ShowS #
Generic OperationEvent #
Associated Types type Rep OperationEvent :: * -> * # Methods from :: OperationEvent -> Rep OperationEvent x # to :: Rep OperationEvent x -> OperationEvent #
ToJSON OperationEvent #
Methods toJSON :: OperationEvent -> Value # toEncoding :: OperationEvent -> Encoding # toJSONList :: [OperationEvent] -> Value # toEncodingList :: [OperationEvent] -> Encoding #
FromJSON OperationEvent #
Methods parseJSON :: Value -> Parser OperationEvent # parseJSONList :: Value -> Parser [OperationEvent] #
type Rep OperationEvent #
type Rep OperationEvent = D1 (MetaData "OperationEvent" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "OperationEvent'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_oeStartTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) ((::) (S1 (MetaSel (Just Symbol "_oeEndTime") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe DateTime'))) (S1 (MetaSel (Just Symbol "_oeDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))))))

operationEvent :: OperationEvent #

Creates a value of OperationEvent with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

oeStartTime :: Lens' OperationEvent (Maybe UTCTime) #

Optional time of when event started.

oeEndTime :: Lens' OperationEvent (Maybe UTCTime) #

Optional time of when event finished. An event can have a start time and no finish time. If an event has a finish time, there must be a start time.

oeDescription :: Lens' OperationEvent (Maybe Text) #

Required description of event.

ReferenceBound

data ReferenceBound #

ReferenceBound records an upper bound for the starting coordinate of variants in a particular reference.

See: referenceBound smart constructor.

Instances

Eq ReferenceBound #
Methods (==) :: ReferenceBound -> ReferenceBound -> Bool # (/=) :: ReferenceBound -> ReferenceBound -> Bool #
Data ReferenceBound #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReferenceBound -> c ReferenceBound # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReferenceBound # toConstr :: ReferenceBound -> Constr # dataTypeOf :: ReferenceBound -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReferenceBound) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReferenceBound) # gmapT :: (forall b. Data b => b -> b) -> ReferenceBound -> ReferenceBound # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceBound -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceBound -> r # gmapQ :: (forall d. Data d => d -> u) -> ReferenceBound -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReferenceBound -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceBound -> m ReferenceBound #
Show ReferenceBound #
Methods showsPrec :: Int -> ReferenceBound -> ShowS # show :: ReferenceBound -> String # showList :: [ReferenceBound] -> ShowS #
Generic ReferenceBound #
Associated Types type Rep ReferenceBound :: * -> * # Methods from :: ReferenceBound -> Rep ReferenceBound x # to :: Rep ReferenceBound x -> ReferenceBound #
ToJSON ReferenceBound #
Methods toJSON :: ReferenceBound -> Value # toEncoding :: ReferenceBound -> Encoding # toJSONList :: [ReferenceBound] -> Value # toEncodingList :: [ReferenceBound] -> Encoding #
FromJSON ReferenceBound #
Methods parseJSON :: Value -> Parser ReferenceBound # parseJSONList :: Value -> Parser [ReferenceBound] #
type Rep ReferenceBound #
type Rep ReferenceBound = D1 (MetaData "ReferenceBound" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ReferenceBound'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_rbUpperBound") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))) (S1 (MetaSel (Just Symbol "_rbReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

referenceBound :: ReferenceBound #

Creates a value of ReferenceBound with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rbUpperBound
rbReferenceName

rbUpperBound :: Lens' ReferenceBound (Maybe Int64) #

An upper bound (inclusive) on the starting coordinate of any variant in the reference sequence.

rbReferenceName :: Lens' ReferenceBound (Maybe Text) #

The name of the reference associated with this reference bound.

UndeleteDataSetRequest

data UndeleteDataSetRequest #

Instances

Eq UndeleteDataSetRequest #
Methods (==) :: UndeleteDataSetRequest -> UndeleteDataSetRequest -> Bool # (/=) :: UndeleteDataSetRequest -> UndeleteDataSetRequest -> Bool #
Data UndeleteDataSetRequest #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> UndeleteDataSetRequest -> c UndeleteDataSetRequest # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c UndeleteDataSetRequest # toConstr :: UndeleteDataSetRequest -> Constr # dataTypeOf :: UndeleteDataSetRequest -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c UndeleteDataSetRequest) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c UndeleteDataSetRequest) # gmapT :: (forall b. Data b => b -> b) -> UndeleteDataSetRequest -> UndeleteDataSetRequest # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> UndeleteDataSetRequest -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> UndeleteDataSetRequest -> r # gmapQ :: (forall d. Data d => d -> u) -> UndeleteDataSetRequest -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> UndeleteDataSetRequest -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> UndeleteDataSetRequest -> m UndeleteDataSetRequest #
Show UndeleteDataSetRequest #
Methods showsPrec :: Int -> UndeleteDataSetRequest -> ShowS # show :: UndeleteDataSetRequest -> String # showList :: [UndeleteDataSetRequest] -> ShowS #
Generic UndeleteDataSetRequest #
Associated Types type Rep UndeleteDataSetRequest :: * -> * # Methods from :: UndeleteDataSetRequest -> Rep UndeleteDataSetRequest x # to :: Rep UndeleteDataSetRequest x -> UndeleteDataSetRequest #
ToJSON UndeleteDataSetRequest #
Methods toJSON :: UndeleteDataSetRequest -> Value # toEncoding :: UndeleteDataSetRequest -> Encoding # toJSONList :: [UndeleteDataSetRequest] -> Value # toEncodingList :: [UndeleteDataSetRequest] -> Encoding #
FromJSON UndeleteDataSetRequest #
Methods parseJSON :: Value -> Parser UndeleteDataSetRequest # parseJSONList :: Value -> Parser [UndeleteDataSetRequest] #
type Rep UndeleteDataSetRequest #
type Rep UndeleteDataSetRequest = D1 (MetaData "UndeleteDataSetRequest" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "UndeleteDataSetRequest'" PrefixI False) U1)

undeleteDataSetRequest :: UndeleteDataSetRequest #

Creates a value of UndeleteDataSetRequest with the minimum fields required to make a request.

Binding

data Binding #

Associates `members` with a `role`.

See: binding smart constructor.

Instances

Eq Binding #
Methods (==) :: Binding -> Binding -> Bool # (/=) :: Binding -> Binding -> Bool #
Data Binding #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Binding -> c Binding # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Binding # toConstr :: Binding -> Constr # dataTypeOf :: Binding -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Binding) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Binding) # gmapT :: (forall b. Data b => b -> b) -> Binding -> Binding # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Binding -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Binding -> r # gmapQ :: (forall d. Data d => d -> u) -> Binding -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Binding -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Binding -> m Binding # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Binding -> m Binding # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Binding -> m Binding #
Show Binding #
Methods showsPrec :: Int -> Binding -> ShowS # show :: Binding -> String # showList :: [Binding] -> ShowS #
Generic Binding #
Associated Types type Rep Binding :: * -> * # Methods from :: Binding -> Rep Binding x # to :: Rep Binding x -> Binding #
ToJSON Binding #
Methods toJSON :: Binding -> Value # toEncoding :: Binding -> Encoding # toJSONList :: [Binding] -> Value # toEncodingList :: [Binding] -> Encoding #
FromJSON Binding #
Methods parseJSON :: Value -> Parser Binding # parseJSONList :: Value -> Parser [Binding] #
type Rep Binding #
type Rep Binding = D1 (MetaData "Binding" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Binding'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_bMembers") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_bRole") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))

binding :: Binding #

Creates a value of Binding with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

bMembers
bRole

bMembers :: Lens' Binding [Text] #

Specifies the identities requesting access for a Cloud Platform resource. `members` can have the following values: * `allUsers`: A special identifier that represents anyone who is on the internet; with or without a Google account. * `allAuthenticatedUsers`: A special identifier that represents anyone who is authenticated with a Google account or a service account. * `user:{emailid}`: An email address that represents a specific Google account. For example, `alice'gmail.com` or `joe'example.com`. * `serviceAccount:{emailid}`: An email address that represents a service account. For example, `my-other-app'appspot.gserviceaccount.com`. * `group:{emailid}`: An email address that represents a Google group. For example, `admins'example.com`. * `domain:{domain}`: A Google Apps domain name that represents all the users of that domain. For example, `google.com` or `example.com`.

bRole :: Lens' Binding (Maybe Text) #

Role that is assigned to `members`. For example, `roles/viewer`, `roles/editor`, or `roles/owner`. Required

Position

data Position #

An abstraction for referring to a genomic position, in relation to some already known reference. For now, represents a genomic position as a reference name, a base number on that reference (0-based), and a determination of forward or reverse strand.

See: position smart constructor.

Instances

Eq Position #
Methods (==) :: Position -> Position -> Bool # (/=) :: Position -> Position -> Bool #
Data Position #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> Position -> c Position # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c Position # toConstr :: Position -> Constr # dataTypeOf :: Position -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c Position) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c Position) # gmapT :: (forall b. Data b => b -> b) -> Position -> Position # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> Position -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> Position -> r # gmapQ :: (forall d. Data d => d -> u) -> Position -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> Position -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> Position -> m Position # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> Position -> m Position # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> Position -> m Position #
Show Position #
Methods showsPrec :: Int -> Position -> ShowS # show :: Position -> String # showList :: [Position] -> ShowS #
Generic Position #
Associated Types type Rep Position :: * -> * # Methods from :: Position -> Rep Position x # to :: Rep Position x -> Position #
ToJSON Position #
Methods toJSON :: Position -> Value # toEncoding :: Position -> Encoding # toJSONList :: [Position] -> Value # toEncodingList :: [Position] -> Encoding #
FromJSON Position #
Methods parseJSON :: Value -> Parser Position # parseJSONList :: Value -> Parser [Position] #
type Rep Position #
type Rep Position = D1 (MetaData "Position" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "Position'" PrefixI True) ((::) (S1 (MetaSel (Just Symbol "_pReverseStrand") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Bool))) ((::) (S1 (MetaSel (Just Symbol "_pReferenceName") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_pPosition") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int64)))))))

position :: Position #

Creates a value of Position with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

pReverseStrand :: Lens' Position (Maybe Bool) #

Whether this position is on the reverse strand, as opposed to the forward strand.

pReferenceName :: Lens' Position (Maybe Text) #

The name of the reference in whatever reference set is being used.

pPosition :: Lens' Position (Maybe Int64) #

The 0-based offset from the start of the forward strand for that reference.

RuntimeMetadata

data RuntimeMetadata #

Runtime metadata that will be populated in the runtimeMetadata field of the Operation associated with a RunPipeline execution.

See: runtimeMetadata smart constructor.

Instances

Eq RuntimeMetadata #
Methods (==) :: RuntimeMetadata -> RuntimeMetadata -> Bool # (/=) :: RuntimeMetadata -> RuntimeMetadata -> Bool #
Data RuntimeMetadata #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> RuntimeMetadata -> c RuntimeMetadata # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c RuntimeMetadata # toConstr :: RuntimeMetadata -> Constr # dataTypeOf :: RuntimeMetadata -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c RuntimeMetadata) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c RuntimeMetadata) # gmapT :: (forall b. Data b => b -> b) -> RuntimeMetadata -> RuntimeMetadata # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> RuntimeMetadata -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> RuntimeMetadata -> r # gmapQ :: (forall d. Data d => d -> u) -> RuntimeMetadata -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> RuntimeMetadata -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> RuntimeMetadata -> m RuntimeMetadata #
Show RuntimeMetadata #
Methods showsPrec :: Int -> RuntimeMetadata -> ShowS # show :: RuntimeMetadata -> String # showList :: [RuntimeMetadata] -> ShowS #
Generic RuntimeMetadata #
Associated Types type Rep RuntimeMetadata :: * -> * # Methods from :: RuntimeMetadata -> Rep RuntimeMetadata x # to :: Rep RuntimeMetadata x -> RuntimeMetadata #
ToJSON RuntimeMetadata #
Methods toJSON :: RuntimeMetadata -> Value # toEncoding :: RuntimeMetadata -> Encoding # toJSONList :: [RuntimeMetadata] -> Value # toEncodingList :: [RuntimeMetadata] -> Encoding #
FromJSON RuntimeMetadata #
Methods parseJSON :: Value -> Parser RuntimeMetadata # parseJSONList :: Value -> Parser [RuntimeMetadata] #
type Rep RuntimeMetadata #
type Rep RuntimeMetadata = D1 (MetaData "RuntimeMetadata" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "RuntimeMetadata'" PrefixI True) (S1 (MetaSel (Just Symbol "_rmComputeEngine") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (Maybe ComputeEngine))))

runtimeMetadata :: RuntimeMetadata #

Creates a value of RuntimeMetadata with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rmComputeEngine

rmComputeEngine :: Lens' RuntimeMetadata (Maybe ComputeEngine) #

Execution information specific to Google Compute Engine.

SearchReadGroupSetsResponse

data SearchReadGroupSetsResponse #

The read group set search response.

See: searchReadGroupSetsResponse smart constructor.

Instances

Eq SearchReadGroupSetsResponse #
Methods (==) :: SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse -> Bool # (/=) :: SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse -> Bool #
Data SearchReadGroupSetsResponse #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> SearchReadGroupSetsResponse -> c SearchReadGroupSetsResponse # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c SearchReadGroupSetsResponse # toConstr :: SearchReadGroupSetsResponse -> Constr # dataTypeOf :: SearchReadGroupSetsResponse -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c SearchReadGroupSetsResponse) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c SearchReadGroupSetsResponse) # gmapT :: (forall b. Data b => b -> b) -> SearchReadGroupSetsResponse -> SearchReadGroupSetsResponse # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsResponse -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> SearchReadGroupSetsResponse -> r # gmapQ :: (forall d. Data d => d -> u) -> SearchReadGroupSetsResponse -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> SearchReadGroupSetsResponse -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> SearchReadGroupSetsResponse -> m SearchReadGroupSetsResponse #
Show SearchReadGroupSetsResponse #
Methods showsPrec :: Int -> SearchReadGroupSetsResponse -> ShowS # show :: SearchReadGroupSetsResponse -> String # showList :: [SearchReadGroupSetsResponse] -> ShowS #
Generic SearchReadGroupSetsResponse #
Associated Types type Rep SearchReadGroupSetsResponse :: * -> * # Methods from :: SearchReadGroupSetsResponse -> Rep SearchReadGroupSetsResponse x # to :: Rep SearchReadGroupSetsResponse x -> SearchReadGroupSetsResponse #
ToJSON SearchReadGroupSetsResponse #
Methods toJSON :: SearchReadGroupSetsResponse -> Value # toEncoding :: SearchReadGroupSetsResponse -> Encoding # toJSONList :: [SearchReadGroupSetsResponse] -> Value # toEncodingList :: [SearchReadGroupSetsResponse] -> Encoding #
FromJSON SearchReadGroupSetsResponse #
Methods parseJSON :: Value -> Parser SearchReadGroupSetsResponse # parseJSONList :: Value -> Parser [SearchReadGroupSetsResponse] #
type Rep SearchReadGroupSetsResponse #
type Rep SearchReadGroupSetsResponse = D1 (MetaData "SearchReadGroupSetsResponse" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "SearchReadGroupSetsResponse'" PrefixI True) ((:*:) (S1 (MetaSel (Just Symbol "_srgsrNextPageToken") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_srgsrReadGroupSets") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [ReadGroupSet])))))

searchReadGroupSetsResponse :: SearchReadGroupSetsResponse #

Creates a value of SearchReadGroupSetsResponse with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

srgsrNextPageToken :: Lens' SearchReadGroupSetsResponse (Maybe Text) #

The continuation token, which is used to page through large result sets. Provide this value in a subsequent request to return the next page of results. This field will be empty if there aren't any additional results.

srgsrReadGroupSets :: Lens' SearchReadGroupSetsResponse [ReadGroupSet] #

The list of matching read group sets.

ReadGroupSetInfo

data ReadGroupSetInfo #

A map of additional read group set information.

See: readGroupSetInfo smart constructor.

Instances

Eq ReadGroupSetInfo #
Methods (==) :: ReadGroupSetInfo -> ReadGroupSetInfo -> Bool # (/=) :: ReadGroupSetInfo -> ReadGroupSetInfo -> Bool #
Data ReadGroupSetInfo #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReadGroupSetInfo -> c ReadGroupSetInfo # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReadGroupSetInfo # toConstr :: ReadGroupSetInfo -> Constr # dataTypeOf :: ReadGroupSetInfo -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReadGroupSetInfo) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReadGroupSetInfo) # gmapT :: (forall b. Data b => b -> b) -> ReadGroupSetInfo -> ReadGroupSetInfo # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetInfo -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReadGroupSetInfo -> r # gmapQ :: (forall d. Data d => d -> u) -> ReadGroupSetInfo -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReadGroupSetInfo -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReadGroupSetInfo -> m ReadGroupSetInfo #
Show ReadGroupSetInfo #
Methods showsPrec :: Int -> ReadGroupSetInfo -> ShowS # show :: ReadGroupSetInfo -> String # showList :: [ReadGroupSetInfo] -> ShowS #
Generic ReadGroupSetInfo #
Associated Types type Rep ReadGroupSetInfo :: * -> * # Methods from :: ReadGroupSetInfo -> Rep ReadGroupSetInfo x # to :: Rep ReadGroupSetInfo x -> ReadGroupSetInfo #
ToJSON ReadGroupSetInfo #
Methods toJSON :: ReadGroupSetInfo -> Value # toEncoding :: ReadGroupSetInfo -> Encoding # toJSONList :: [ReadGroupSetInfo] -> Value # toEncodingList :: [ReadGroupSetInfo] -> Encoding #
FromJSON ReadGroupSetInfo #
Methods parseJSON :: Value -> Parser ReadGroupSetInfo # parseJSONList :: Value -> Parser [ReadGroupSetInfo] #
type Rep ReadGroupSetInfo #
type Rep ReadGroupSetInfo = D1 (MetaData "ReadGroupSetInfo" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" True) (C1 (MetaCons "ReadGroupSetInfo'" PrefixI True) (S1 (MetaSel (Just Symbol "_rgsiAddtional") NoSourceUnpackedness NoSourceStrictness DecidedLazy) (Rec0 (HashMap Text [JSONValue]))))

readGroupSetInfo #

Arguments

:: HashMap Text [JSONValue]	`rgsiAddtional`
-> ReadGroupSetInfo

Creates a value of ReadGroupSetInfo with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rgsiAddtional

rgsiAddtional :: Lens' ReadGroupSetInfo (HashMap Text [JSONValue]) #

ReferenceSet

data ReferenceSet #

A reference set is a set of references which typically comprise a reference assembly for a species, such as `GRCh38` which is representative of the human genome. A reference set defines a common coordinate space for comparing reference-aligned experimental data. A reference set contains 1 or more references. For more genomics resource definitions, see Fundamentals of Google Genomics

See: referenceSet smart constructor.

Instances

Eq ReferenceSet #
Methods (==) :: ReferenceSet -> ReferenceSet -> Bool # (/=) :: ReferenceSet -> ReferenceSet -> Bool #
Data ReferenceSet #
Methods gfoldl :: (forall d b. Data d => c (d -> b) -> d -> c b) -> (forall g. g -> c g) -> ReferenceSet -> c ReferenceSet # gunfold :: (forall b r. Data b => c (b -> r) -> c r) -> (forall r. r -> c r) -> Constr -> c ReferenceSet # toConstr :: ReferenceSet -> Constr # dataTypeOf :: ReferenceSet -> DataType # dataCast1 :: Typeable (* -> ) t => (forall d. Data d => c (t d)) -> Maybe (c ReferenceSet) # dataCast2 :: Typeable ( -> * -> *) t => (forall d e. (Data d, Data e) => c (t d e)) -> Maybe (c ReferenceSet) # gmapT :: (forall b. Data b => b -> b) -> ReferenceSet -> ReferenceSet # gmapQl :: (r -> r' -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceSet -> r # gmapQr :: (r' -> r -> r) -> r -> (forall d. Data d => d -> r') -> ReferenceSet -> r # gmapQ :: (forall d. Data d => d -> u) -> ReferenceSet -> [u] # gmapQi :: Int -> (forall d. Data d => d -> u) -> ReferenceSet -> u # gmapM :: Monad m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet # gmapMp :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet # gmapMo :: MonadPlus m => (forall d. Data d => d -> m d) -> ReferenceSet -> m ReferenceSet #
Show ReferenceSet #
Methods showsPrec :: Int -> ReferenceSet -> ShowS # show :: ReferenceSet -> String # showList :: [ReferenceSet] -> ShowS #
Generic ReferenceSet #
Associated Types type Rep ReferenceSet :: * -> * # Methods from :: ReferenceSet -> Rep ReferenceSet x # to :: Rep ReferenceSet x -> ReferenceSet #
ToJSON ReferenceSet #
Methods toJSON :: ReferenceSet -> Value # toEncoding :: ReferenceSet -> Encoding # toJSONList :: [ReferenceSet] -> Value # toEncodingList :: [ReferenceSet] -> Encoding #
FromJSON ReferenceSet #
Methods parseJSON :: Value -> Parser ReferenceSet # parseJSONList :: Value -> Parser [ReferenceSet] #
type Rep ReferenceSet #
type Rep ReferenceSet = D1 (MetaData "ReferenceSet" "Network.Google.Genomics.Types.Product" "gogol-genomics-0.3.0-7I4bOf5ZD735qE8J3VaiTG" False) (C1 (MetaCons "ReferenceSet'" PrefixI True) ((::) ((::) ((::) (S1 (MetaSel (Just Symbol "_rsSourceAccessions") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text]))) (S1 (MetaSel (Just Symbol "_rsReferenceIds") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe [Text])))) ((::) (S1 (MetaSel (Just Symbol "_rsMD5checksum") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsNcbiTaxonId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe (Textual Int32)))))) ((::) ((::) (S1 (MetaSel (Just Symbol "_rsId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsAssemblyId") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))) ((:*:) (S1 (MetaSel (Just Symbol "_rsSourceURI") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text))) (S1 (MetaSel (Just Symbol "_rsDescription") NoSourceUnpackedness SourceStrict DecidedStrict) (Rec0 (Maybe Text)))))))

referenceSet :: ReferenceSet #

Creates a value of ReferenceSet with the minimum fields required to make a request.

Use one of the following lenses to modify other fields as desired:

rsSourceAccessions :: Lens' ReferenceSet [Text] #

All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally with a version number, for example `NC_000001.11`.

rsReferenceIds :: Lens' ReferenceSet [Text] #

The IDs of the reference objects that are part of this set. `Reference.md5checksum` must be unique within this set.

rsMD5checksum :: Lens' ReferenceSet (Maybe Text) #

Order-independent MD5 checksum which identifies this reference set. The checksum is computed by sorting all lower case hexidecimal string `reference.md5checksum` (for all reference in this set) in ascending lexicographic order, concatenating, and taking the MD5 of that value. The resulting value is represented in lower case hexadecimal format.

rsNcbiTaxonId :: Lens' ReferenceSet (Maybe Int32) #

ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human) indicating the species which this reference set is intended to model. Note that contained references may specify a different `ncbiTaxonId`, as assemblies may contain reference sequences which do not belong to the modeled species, for example EBV in a human reference genome.

rsId :: Lens' ReferenceSet (Maybe Text) #

The server-generated reference set ID, unique across all reference sets.

rsAssemblyId :: Lens' ReferenceSet (Maybe Text) #

Public id of this reference set, such as `GRCh37`.

rsSourceURI :: Lens' ReferenceSet (Maybe Text) #

The URI from which the references were obtained.

rsDescription :: Lens' ReferenceSet (Maybe Text) #

Free text description of this reference set.