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Code to deal with COMPASS output, a program for profile/profile comparison.
Compass is described in:
Sadreyev R, Grishin N. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J Mol Biol. 2003 Feb 7;326(1):317-36.
Tested with COMPASS 1.24.
Classes: Record One result of a compass file _Scanner Scan compass results _Consumer Consume scanner events RecordParser Parse one compass record Iterator Iterate through a number of compass records
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Record Hold information from one compass hit. |
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_Scanner Reads compass output and generate events |
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RecordParser Parses compass results into a Record object. |
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Iterator Iterate through a file of compass results |
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StringTypes =
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xml_support = 1
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