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Code to interact with Primer-related programs from EMBOSS (DEPRECATED).
Bio.Emboss.Primer has been deprecated, please use Bio.Emboss.Primer3 or
Bio.Emboss.PrimerSearch instead.
To parse primersearch output into a PrimerSearch.OutputRecord, use
from Bio.Emboss import PrimerSearch
handle = open('myprimersearchoutputfile.txt')
record = PrimerSearch.read(handle)
To parse primer3 output into a Primer3.Record, use
from Bio.Emboss import Primer3
handle = open('myprimer3outputfile.txt')
record = Primer3.read(handle)
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PrimerSearchInputRecord Represent the input file into the primersearch program. |
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PrimerSearchParser Parse primersearch output into a PrimerSearchOutputRecord. |
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PrimerSearchOutputRecord Represent the information from a primersearch job. |
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PrimerSearchAmplifier Represent a single amplification from a primer. |
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_PrimerSearchRecordConsumer Get output from primersearch into a PrimerSearchOutputRecord |
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_PrimerSearchScanner Scan output from the primersearch program. |
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Primer3Record Represent information from a primer3 run finding primers. |
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Primer3Primers A primer set designed by Primer3. |
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Primer3Parser Parse primer3 output into a Primer3Record. |
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_Primer3RecordConsumer Get output from prime3 into a Primer3Record |
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_Primer3Scanner Scan output from the primer3 program. |
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__warningregistry__ =
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__warningregistry__
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