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Parser for FSSP files, used in a database of protein fold classifications.
This is a module to handle FSSP files. For now it parses only the header, summary and alignment sections.
See: Holm and Sander (1996) The FSSP database: fold classification based on structure-structure alignment of proteins.
functions: read_fssp(file_handle): reads an fssp file into the records. Returns a tuple of two instances. mult_align: returns a Biopython alignment object
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| FSSPHeader | |||
| PosAlign | |||
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FSSPSumRec Contains info from an FSSP summary record |
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| FSSPAlignRec | |||
| FSSPAlignDict | |||
| FSSPSumDict | |||
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header_records =
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summary_title = re.compile(r'##
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summary_rec = re.compile(r'
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alignments_title = re.compile(r'##
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alignments_rec = re.compile(r'
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equiv_title = re.compile(r'##
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header_records
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