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Bio.GFF.easy: some functions to ease the use of Biopython
Version: $Revision: 1.12 $
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FeatureDict JH: accessing feature.qualifiers as a list is stupid. |
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Location this is really best interfaced through LocationFromString fuzzy: < or > join: {0 = no join, 1 = join, 2 = order} |
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| LocationJoin | |||
| LocationFromCoords | |||
| LocationFromString | |||
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re_complement = re.compile(r"^complement\((.*)\)$")
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re_seqname = re.compile(r"^(?!join|order|complement)([^\:]+?):
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re_join = re.compile(r"^(join|order)\((.*)\)$")
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re_dotdot = re.compile(r"^([><]*\d+)\.\.([><]*\d+)$")
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re_fuzzy = re.compile(r"^([><])(\d+)")
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returns the sequence of a record can be Bio.SeqRecord.SeqRecord or Bio.GenBank.Record.Record |
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re_seqname
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