| Trees | Indices | Help |
|---|
|
|
AbstractPropertyMap.AbstractPropertyMap --+
|
AbstractPropertyMap.AbstractResiduePropertyMap --+
|
DSSP
Run DSSP on a pdb file, and provide a handle to the DSSP secondary structure and accessibility.
Note that DSSP can only handle one model.
Example:
>>> p=PDBParser() >>> structure=parser.get_structure("1fat.pdb") >>> model=structure[0] >>> dssp=DSSP(model, "1fat.pdb") >>> # print dssp data for a residue >>> secondary_structure, accessibility=dssp[(chain_id, res_id)]
|
|||
|
|||
|
Inherited from Inherited from |
|||
|
|||
|
| Trees | Indices | Help |
|---|
| Generated by Epydoc 3.0.1 on Sun May 3 17:14:21 2009 | http://epydoc.sourceforge.net |