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Gets a demograpy template.
Most probably this model needs to be sent to GenCases.
stream - Writable stream.
param - Template file.
tp_dir - Directory where to find the template, if None
use an internal template
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Writes a Simcoal2 loci template part.
stream - Writable stream.
chr - Chromosome list.
Current loci list:
[(chr_repeats,[(marker, (params))])]
chr_repeats --> Number of chromosome repeats
marker --> 'SNP', 'DNA', 'RFLP', 'MICROSAT'
params --> Simcoal2 parameters for markers (list of floats
or ints - if to be processed by generate_model)
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Writes a complete SimCoal2 template file. This joins together get_demography_template and get_chr_template, which are feed into generate_model Please check the three functions for parameters (model from get_demography_template, chrs from get_chr_template and params from generate_model). |
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| Generated by Epydoc 3.0.1 on Sun May 3 17:14:12 2009 | http://epydoc.sourceforge.net |