Package Bio :: Package AlignAce
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Package AlignAce

source code

Parser and code for dealing with the standalone version of AlignAce, a motif search program (DEPRECATED).

It also includes a very simple interface to CompareACE tool. http://atlas.med.harvard.edu/

Now superseded by Bio.Motif

Class mapping: Bio.AlignAce.AlignAceStandalone -> Bio.Motif.Applications.AlignAceCommandline Bio.AlignAce.CompareAceStandalone -> Bio.Motif.Applications.CompareAceCommandline Bio.Alignace.Motif -> Bio.Motif.Motif Bio.AlignAce.Parser.CompareAceParser -> Bio.Motif.CompareAceParser

Instead of using Bio.AlignAce.Parser.AlignAceParser class, you can use Bio.Motif.parse(handle,format="AlignAce")

Submodules [hide private]

Variables [hide private]
  __package__ = 'Bio.AlignAce'
  __warningregistry__ = {('Bio.AlignAce is deprecated. Please us...
Variables Details [hide private]

__warningregistry__

Value:
{('Bio.AlignAce is deprecated. Please use Bio.Motif instead.',
  <type 'exceptions.DeprecationWarning'>,
  26): True}