Trees | Indices | Help |
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object --+ | TreeElement --+ | object --+ | | | TreeMixin --+ | Tree
A phylogenetic tree, containing global info for the phylogeny.
The structure and node-specific data is accessible through the 'root' subtree attached to the Tree instance.
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Inherited from Inherited from Inherited from Inherited from |
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clade The first subtree in this tree (not itself). |
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Inherited from |
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x.__init__(...) initializes x; see x.__class__.__doc__ for signature
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Create a new Tree object given a subtree. Keyword arguments are the usual Tree constructor parameters. |
Create a randomized bifurcating tree given a list of taxa.
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Serialize the tree as a string in the specified file format. This method supports the format() built-in function added in Python 2.6/3.0. The format_spec should be a lower case string supported by Bio.Phylo.write as an output file format.
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Serialize the tree as a string in the specified file format. This duplicates the __format__ magic method for pre-2.6 Pythons. |
String representation of the entire tree. Serializes each sub-clade recursively using repr() to create a summary of the object structure.
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cladeThe first subtree in this tree (not itself).
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Trees | Indices | Help |
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