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Polypeptide related classes (construction and representation).
Example:
>>> ppb=PPBuilder() >>> for pp in ppb.build_peptides(structure): >>> print pp.get_sequence()
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Polypeptide A polypeptide is simply a list of Residue objects. |
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_PPBuilder Base class to extract polypeptides. |
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CaPPBuilder Use CA--CA distance to find polypeptides. |
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PPBuilder Use C--N distance to find polypeptides. |
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__doc__ =
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standard_aa_names =
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aa1 =
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aa3 =
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d1_to_index =
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dindex_to_1 =
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d3_to_index =
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dindex_to_3 =
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__package__ =
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i = 19
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n1 =
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n3 =
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Index to corresponding one letter amino acid name. For example: 0 to A. |
One letter code to index. For example: A to 0. |
Index to corresponding three letter amino acid name. For example: 0 to ALA. |
Three letter code to index. For example: ALA to 0. |
Three letter code to one letter code. For example: ALA to A. |
One letter code to three letter code. For example: A to ALA. |
Return 1 if residue object/string is an amino acid. |
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__doc__
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standard_aa_names
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aa3
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d1_to_index
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dindex_to_1
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d3_to_index
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dindex_to_3
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