Class AlignAceScanner
source code
Scannner for AlignACE output (OBSOLETE).
Methods: feed Feed data into the scanner.
The scanner generates (and calls the consumer) the following types of
events:
noevent - blank line
version - AlignACE version number command_line - AlignACE command line
string parameters - the begining of the parameters parameter - the line
containing a parameter sequences - the begining of the sequences list
sequence - line containing the name of the input sequence (and a
respective number) motif - the begining of the motif (contains the
number) motif_hit - one hit for a motif motif_mask - mask of the motif
(space - gap, asterisk - significant position) motif_score - MAP score of
the motif - approx. N * log R, where R == (num. of actual occur.) / (num.
of occur. expected by random.)
This class is OBSOLETE; please use the read() function in this module
instead.
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feed(S,
handle,
consumer)
Feed in a AlignACE report for scanning. |
source code
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Feed in a AlignACE report for scanning. handle is a file-like object
that contains the AlignACE report. consumer is a Consumer object that
will receive events as the report is scanned.
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