Here is a list of all class members with links to the classes they belong to:

- m -

m_a : vg::uniform_int_distribution< T >, vg::uniform_real_distribution< T >
m_alpha : vg::truncated_normal_distribution< T >
m_b : vg::uniform_int_distribution< T >, vg::uniform_real_distribution< T >
m_beta : vg::truncated_normal_distribution< T >
m_distU1 : vg::normal_distribution< T >, vg::truncated_normal_distribution< T >
m_mean : vg::normal_distribution< T >
m_mu : vg::truncated_normal_distribution< T >
m_sigma : vg::truncated_normal_distribution< T >
m_stddev : vg::normal_distribution< T >
m_sums : vg::discrete_distribution< T >
m_weights : vg::discrete_distribution< T >
MAGIC_BYTES : vg::StreamIndexBase
MAGIC_NUMBER : vg::Haplotypes::Header
magic_number : vg::Haplotypes::Header, vg::ZipCodeCollection
main_function : vg::subcommand::Subcommand
make_bands() : vg::Mapper
make_circular() : vg::Paths
make_compact() : vg::Packer
make_dynamic() : vg::Packer
make_edge() : vg::PhaseUnfolder
make_empty() : vg::WFAAlignment
make_filename() : vg::Explainer
make_graph() : vg::MSAConverter
make_gref_base_name() : vg::GrefCover
make_gref_copy_name() : vg::GrefCover
make_gref_name() : vg::GrefCover
make_hit_graph() : vg::ComponentMinDistanceClusterer, vg::GreedyMinDistanceClusterer, vg::MEMClusterer, vg::MinDistanceClusterer, vg::NullClusterer, vg::OrientedDistanceClusterer, vg::TVSClusterer
make_indexes() : vg::IndexRegistry
make_linear() : vg::Paths
make_long_options() : vg::subcommand::BaseOptionGroup, vg::subcommand::GroupedOptionGroup, vg::subcommand::OptionGroup< Receiver >
make_nontrivial_multipath_alignment() : vg::MultipathMapper
make_null_alignment() : vg::Surjector
make_null_mp_alignment() : vg::Surjector
make_plan() : vg::IndexRegistry
make_primer() : vg::PrimerFinder
make_short_options() : vg::subcommand::BaseOptionGroup, vg::subcommand::GroupedOptionGroup, vg::subcommand::OptionGroup< Receiver >
make_snarl_graph() : vg::MCMCGenotyper
make_snarl_map() : vg::MCMCGenotyper
make_subset_graph() : vg::Genotyper
make_unlocalized_insertion() : vg::WFAAlignment
make_visit_source() : vg::algorithms::GFAzParser
manage() : vg::SnarlManager
MANDATORY_FIELDS : vg::GAFSorterRecord
MANY_LIMIT : vg::MinimizerMapper
map() : vg::MinimizerMapper
map_entry_type : vg::WFAPoint
map_from_chains() : vg::MinimizerMapper
map_from_extensions() : vg::MinimizerMapper
map_order_to_original : vg::WindowedVcfBuffer
map_paired() : vg::MinimizerMapper
map_stage_results_to_previous_stage() : vg::Funnel
map_to_nodes() : vg::PrimerFinder
mapped_nodes_ids : vg::Primer
Mapper() : vg::Mapper
mapper_alignment_cutoff : vg::VariantAdder
mapping() : vg::path_t, vg::PhaseUnfolder
mapping_edits : vg::BandedGlobalAligner< IntType >::BABuilder
mapping_enters_side() : vg::Genotyper
mapping_exits_side() : vg::Genotyper
mapping_is_total_match() : vg::VG
mapping_itr : vg::Paths
mapping_likelihoods() : vg::MultipathMapper
mapping_path_id() : vg::Paths
mapping_path_name() : vg::Paths
mapping_positions : vg::PathIndex
mapping_quality() : vg::multipath_alignment_t
mapping_quality_method : vg::BaseMapper
mapping_quality_score_diff() : vg::MappingQualityCalculator
mapping_size() : vg::path_t
mapping_t() : vg::mapping_t
mapping_type : vg::RebuildJob
MappingQualityCalculator() : vg::MappingQualityCalculator
mappings : vg::RebuildJob
mappings_by_rank : vg::Paths
mapq_calc : vg::GSSWAligner
mapq_scaling_factor : vg::MultipathMapper
mapq_score_scale : vg::MinimizerMapper
mapq_score_window : vg::MinimizerMapper
margin_after : vg::algorithms::Anchor
margin_before : vg::algorithms::Anchor
mark_dfs() : vg::FlowSort
MarkovDistribution() : vg::NGSSimulator::MarkovDistribution< From, To >
mask : vg::GaplessExtender, vg::ReadMasker, vg::WFAExtender
mask_sequences() : vg::Masker
Masker() : vg::Masker
Match : vg::BandedGlobalAligner< IntType >
match : ScoringOptions, vg::BandedGlobalAligner< IntType >::BAMatrix, vg::EditAlignmentScorer, vg::LoggedGapAlignmentScorer, vg::SSWAligner, vg::WFAAlignment
match_count : vg::MaximalExactMatch
match_fanouts_t : vg::MEMClusterer, vg::MultipathMapper
match_forward() : vg::WFANode
match_predecessor() : vg::WFATree
MATCHES : vg::WFANode
matches() : vg::DinucleotideMachine, vg::LoggedGapAlignmentScorer, vg::SeqComplexity< MaxOrder >
matches_annotation() : vg::ReadFilter< Read >
matches_name() : vg::ReadFilter< Read >
matching : vg::BandedGlobalAligner< IntType >::BABuilder
MatchPos() : vg::MatchPos
mate_rescues : vg::Mapper
matrix_state : vg::BandedGlobalAligner< IntType >::BABuilder
matrix_t : vg::BandedGlobalAligner< IntType >
MatrixAlignmentScorer() : vg::MatrixAlignmentScorer
max : vg::WFAExtender::ErrorModel::Event, vg::WideningPRNG< PRNG, OutType >
max_alignment_gap : vg::MultipathMapper
max_alignments : vg::MinimizerMapper
max_alt_mappings : vg::MultipathMapper
max_anchors : vg::Surjector
max_attempts : vg::Mapper
max_band_cells : vg::Surjector
max_band_jump : vg::Mapper
max_branch_trim_length : vg::MultipathMapper
max_bubble_paths : vg::LegacyCaller, vg::RepresentativeTraversalFinder
max_buf_size : vg::StreamSorter< Message >
max_chain_connection : vg::MinimizerMapper
max_chaining_problems : vg::MinimizerMapper
max_chains_per_tree : vg::MinimizerMapper
max_cluster_mapping_quality : vg::Mapper
max_context_radius : vg::VariantAdder
max_dagify_duplications : vg::MultipathMapper
max_degree : PruningParameters
max_deletion_scan_nodes : vg::VCFTraversalFinder
max_depth : vg::RepresentativeTraversalFinder, vg::ZipCode
max_diagonal : vg::WFATree::ScoreProperties
max_disjoint_gap : vg::Surjector
MAX_DISPLAYED_SUGGESTIONS_PER_CATEGORY : vg::DiagramExplainer
max_distance : vg::IncrementalSubgraph, vg::WFATree
max_distance_from_start() : vg::IncrementalSubgraph
max_dozeu_cells : vg::MinimizerMapper
max_dp_cells : vg::MinimizerMapper
max_expected_dist_approx_error : vg::MultipathMapper, vg::OrientedDistanceClusterer
max_exponential_rate_intercept : vg::MultipathMapper
max_exponential_rate_slope : vg::MultipathMapper
max_exponential_shape_intercept : vg::MultipathMapper
max_exponential_shape_slope : vg::MultipathMapper
max_extension_mismatches : vg::MinimizerMapper
max_extensions : vg::MinimizerMapper
max_fan_in : vg::StreamSorter< Message >
max_fanout_base_quality : vg::MultipathMapper
max_fans_out : vg::MultipathMapper
max_flow_sort() : vg::FlowSort
max_fragment_length : vg::MinimizerMapper
max_gap : vg::MEMClusterer
max_graph_lookback_bases : vg::MinimizerMapper
max_graph_lookback_bases_per_base : vg::MinimizerMapper
max_handle : vg::DozeuPinningOverlay
max_handle_memo_size : vg::MemoizingGraph
max_het_bias : vg::Genotyper, vg::RatioSupportSnarlCaller
max_id : vg::algorithms::GFAIDMapInfo, vg::ConstructedChunk, vg::Constructor, vg::DagifiedGraph, vg::SubHandleGraph
max_in() : vg::algorithms::TracedScore
max_indel_bases : vg::MinimizerMapper
max_indel_bases_per_base : vg::MinimizerMapper
max_indel_het_bias : vg::RatioSupportSnarlCaller
MAX_INPUT_VERSION : vg::StreamIndexBase
max_intron_length : vg::MultipathMapper
MAX_ITERATIONS : vg::MinimizerIndexParameters
max_iterations : vg::SmallSnarlSimplifier
max_kmers_per_block : vg::ParallelKFFReader
max_length : vg::Counts, vg::ReadFilter< Read >
max_link_length() : vg::JoinedSpliceGraph
max_local_extensions : vg::MinimizerMapper
max_low_complexity_anchor_prune : vg::Surjector
max_low_complexity_anchor_trim : vg::Surjector
max_ma_bias : vg::RatioSupportSnarlCaller
max_mapping_p_value : vg::MultipathMapper
max_mapping_quality : vg::BaseMapper
max_memory_proportion : vg::IndexingParameters
max_middle_dp_length : vg::MinimizerMapper
max_middle_gap : vg::MinimizerMapper
max_min_chain_score : vg::MinimizerMapper
MAX_MISMATCHES : vg::GaplessExtender
max_missing_variant_warnings : vg::HaplotypeIndexer
max_motif_pairs : vg::MultipathMapper
max_multi_alns : vg::BandedGlobalAligner< IntType >::AltTracebackStack, vg::BandedGlobalAligner< IntType >
max_multimaps : vg::Mapper, vg::MinimizerMapper
max_node : vg::SubgraphOverlay
max_node_id() : vg::DagifiedGraph, vg::DozeuPinningOverlay, vg::IdentityOverlay, vg::IncrementalSubgraph, vg::JoinedSpliceGraph, vg::MemoizingGraph, vg::NetGraph, vg::NullMaskingGraph, vg::PathSubgraph, vg::ReverseGraph, vg::SnarlGraph, vg::SourceSinkOverlay, vg::StrandSplitGraph, vg::SubgraphOverlay, vg::SubHandleGraph, vg::SubpathOverlay, vg::TreeSubgraph, vg::VG, vg::VGset
max_node_size : vg::Constructor, vg::IndexingParameters, vg::VariantAdder
max_num_nodes : vg::IncrementalSubgraph
max_overhang : vg::Counts, vg::ReadFilter< Read >
max_p_value_memo_size : vg::MultipathMapper
max_parsed_variant_size : vg::Constructor
max_path_id : vg::Paths
max_path_search_steps : vg::Genotyper, vg::PathRestrictedTraversalFinder, vg::ReadRestrictedTraversalFinder
MAX_PATHS : vg::SnarlDistanceIndexClusterer
max_possible_mapping_quality() : vg::Mapper, vg::MappingQualityCalculator
max_product_size : vg::PrimerPair
max_prune_iterations : vg::VCFTraversalFinder
max_read_lookback_bases : vg::MinimizerMapper
max_read_lookback_bases_per_base : vg::MinimizerMapper
max_reads : vg::Counts, vg::ReadFilter< Read >
max_reads_used : vg::ReadFilter< Read >
max_ref_het_bias : vg::RatioSupportSnarlCaller
max_rescue_attempts : vg::MinimizerMapper, vg::MultipathMapper
max_rescue_p_value : vg::MultipathMapper
max_rgfa_rank : vg::algorithms::GFAParser
max_sample_size() : vg::FragmentLengthDistribution
max_search_depth : vg::LegacyCaller
max_search_width : vg::LegacyCaller
max_separation : vg::GreedyMinDistanceClusterer
max_shift() : vg::MultipathAlignmentGraph
max_single_end_mappings_for_rescue : vg::MultipathMapper
max_skipped_bases : vg::MinimizerMapper
max_slide : vg::Surjector
max_snarl_cut_size : vg::MultipathMapper
max_snarl_edges : vg::FlowCaller
max_snarl_shallow_size : vg::NestedFlowCaller
max_snarls_in_one_fragment : vg::GrefCover::TopLevelSnarlStats
max_softclip_iterations : vg::Mapper
max_softclip_overlap : vg::MultipathMapper
max_splice_overhang : vg::MultipathMapper
max_splice_ref_search_length : vg::MultipathMapper
max_steps_of_handle_memo_size : vg::MemoizingGraph
max_sub_mem_recursion_depth : vg::BaseMapper
max_subgraph_bases_per_read_base : vg::Surjector
max_suboptimal_path_score_ratio : vg::MultipathMapper
max_supplementary_overlap : vg::MinimizerMapper
max_supplementary_separation : vg::MinimizerMapper
max_supplementary_uncovered_end : vg::MinimizerMapper
max_tail_anchor_prune : vg::Surjector
max_tail_dp_length : vg::MinimizerMapper
max_tail_gap : vg::MinimizerMapper
max_tail_length : vg::MinimizerMapper, vg::Surjector
max_tail_merge_supress_length : vg::MultipathMapper
max_target_factor : vg::Mapper
max_trav_size : vg::PoissonSupportSnarlCaller::PoissonCallInfo
max_traversal_cutoff : vg::VCFTraversalFinder
max_traversal_length : vg::FlowTraversalFinder
max_tries : vg::AbstractReadSampler
max_uncalled_alleles : vg::VCFOutputCaller
max_unique_min : vg::MinimizerMapper
max_units_in_one_fragment : vg::GrefCover::TopLevelSnarlStats
MAX_VALUE : vg::varint_vector_t
max_value : vg::SummaryStatistics
max_vcf_line_length : vg::VCFOutputCaller
max_vertex() : vg::AlignmentChainModel, vg::MEMChainModel
max_walk : vg::PathOrientedDistanceMeasurer
max_width : vg::RepresentativeTraversalFinder
max_xdrop_gap_length : vg::Mapper
MaximalExactMatch() : vg::MaximalExactMatch
maximum_mapping_quality_approx() : vg::MappingQualityCalculator
maximum_mapping_quality_exact() : vg::MappingQualityCalculator
maximum_quality : vg::Packer
maximum_sample_size : vg::FragmentLengthDistribution
maybe_mq_threshold : vg::Mapper
MCMCCaller() : vg::MCMCCaller
MCMCGenotyper() : vg::MCMCGenotyper
mean() : vg::FragmentLengthDistribution, vg::normal_distribution< T >, vg::SummaryStatistics, vg::truncated_normal_distribution< T >
mean_node_length() : vg::Transcriptome
measurements_begin() : vg::FragmentLengthDistribution
measurements_end() : vg::FragmentLengthDistribution
median : vg::SummaryStatistics
median_mem_coverage() : vg::MEMClusterer::HitGraph
mem : vg::MEMChainModelVertex, vg::MEMClusterer::HitNode
mem_coverage_min_ratio : vg::MultipathMapper
mem_reseed_length : vg::BaseMapper
MEMAccelerator() : vg::MEMAccelerator
MEMChainModel() : vg::MEMChainModel
MEMChainModelVertex() : vg::MEMChainModelVertex
memcluster_t : vg::MultipathMapper
MEMClusterer() : vg::MEMClusterer
memo : haplo::hDP_gbwt_graph_accessor< GBWTType >
memoized_LF() : vg::MEMAccelerator
MemoizingGraph() : vg::MemoizingGraph
memory_high_water_kb : vg::Watchdog
mems_id_clusters_to_alignments() : vg::Mapper
merge : GBWTConfig, vg::Funnel, vg::IntegratedSnarlFinder::MergedAdjacencyGraph, vg::VG
merge_fast : GBWTConfig
merge_from_dynamic() : vg::Packer
merge_from_files() : vg::Packer
merge_group() : vg::Funnel
merge_groups() : vg::Funnel
merge_id_space() : vg::VGset
merge_insert : GBWTConfig
merge_mode : GBWTConfig
merge_nodes() : vg::VG
merge_none : GBWTConfig
merge_parallel : GBWTConfig
merge_parameters : GBWTConfig
merge_partially_redundant_match_nodes() : vg::MultipathAlignmentGraph
merge_rescued_mappings() : vg::MultipathMapper
merge_similar_alleles() : vg::VCFOutputCaller
merge_state() : vg::DinucleotideMachine
merge_union() : vg::VG
MergedAdjacencyGraph() : vg::IntegratedSnarlFinder::MergedAdjacencyGraph
message : vg::AlignmentValidity, vg::NoAlignmentInBandException
message_buffer : vg::algorithms::GFAFormatError
metadata : GBWTConfig, vg::RecombinatorHaplotype
metadata_mode : GBWTConfig
min : vg::WFAExtender::ErrorModel::Event, vg::WideningPRNG< PRNG, OutType >
min_absolute_align_size_to_refuse : vg::Surjector
min_ad_log_likelihood_for_filter : vg::RatioSupportSnarlCaller
min_alt_path_support : vg::SupportBasedSnarlCaller
min_banded_mq : vg::Mapper
min_base_qual : vg::Counts
min_base_quality : vg::ReadFilter< Read >
min_base_quality_fraction : vg::ReadFilter< Read >
min_bp_edge_override : vg::TraversalSupportFinder
min_chain_score_per_base : vg::MinimizerMapper
min_chaining_problems : vg::MinimizerMapper
min_cluster_length : vg::Mapper
min_clustering_mem_length : vg::MultipathMapper
min_count_to_keep : vg::RareVariantSimplifier
min_cut() : vg::FlowSort
min_diagonal : vg::WFATree::ScoreProperties
min_disjoint_gap : vg::Surjector
min_distance : vg::WFATree
min_distance_from_start() : vg::IncrementalSubgraph
min_dists() : vg::DeletionAligner
min_edge_support : vg::RepresentativeTraversalFinder, vg::SupportRestrictedTraversalFinder
min_end_matches : vg::Counts, vg::ReadFilter< Read >
min_extension_sets : vg::MinimizerMapper
min_extensions : vg::MinimizerMapper
min_fold_coverage_for_downsample : vg::Surjector
min_frequency_to_keep : vg::RareVariantSimplifier
MIN_GREF_LENGTH : vg::Recombinator
min_gref_length : vg::Recombinator::Parameters
min_handle : vg::DagifiedGraph
min_id : vg::SubHandleGraph
min_identity : vg::Mapper
min_indel_avoid_bases : vg::MinimizerMapper
min_link_length() : vg::JoinedSpliceGraph
min_mad_for_filter : vg::SupportBasedSnarlCaller
min_mapq : vg::Counts, vg::ReadFilter< Read >
min_mapq0_score : vg::MinimizerMapper
min_median_mem_coverage_for_split : vg::MultipathMapper
min_mem_length : vg::BaseMapper
min_multimaps : vg::Mapper
min_node : vg::SubgraphOverlay
min_node_id() : vg::DagifiedGraph, vg::DozeuPinningOverlay, vg::IdentityOverlay, vg::IncrementalSubgraph, vg::JoinedSpliceGraph, vg::MemoizingGraph, vg::NetGraph, vg::NullMaskingGraph, vg::PathSubgraph, vg::ReverseGraph, vg::SnarlGraph, vg::SourceSinkOverlay, vg::StrandSplitGraph, vg::SubgraphOverlay, vg::SubHandleGraph, vg::SubpathOverlay, vg::TreeSubgraph, vg::VG
min_node_support : vg::RepresentativeTraversalFinder, vg::SupportRestrictedTraversalFinder
min_node_support_cache : vg::CachedPackedTraversalSupportFinder
min_pair_fragment_length() : vg::Mapper
min_primary : vg::ReadFilter< Read >
min_product_size : vg::PrimerPair
min_read_separation : vg::ComponentMinDistanceClusterer
min_recurrence : vg::Genotyper, vg::PathRestrictedTraversalFinder, vg::ReadRestrictedTraversalFinder
min_score : vg::Counts
min_score_factor : vg::VariantAdder
min_score_per_base : vg::Genotyper
min_sec_score : vg::Counts
min_secondary : vg::ReadFilter< Read >
min_separation : vg::GreedyMinDistanceClusterer
min_shift_for_prune : vg::Surjector
min_site_depth : vg::SupportBasedSnarlCaller
min_size : vg::SmallSnarlSimplifier
min_softclip_length_for_splice : vg::MultipathMapper
min_softclipped_score_for_splice : vg::MultipathMapper
min_splice_length : vg::MultipathAlignmentEmitter, vg::SplicedHTSAlignmentEmitter, vg::Surjector
min_splice_repair_length : vg::Surjector
min_splice_rescue_matches : vg::MultipathMapper
min_supplementary_filter_size_proportion : vg::MinimizerMapper
min_supplementary_read_coverage : vg::MinimizerMapper
min_supplementary_score_fraction : vg::MinimizerMapper
min_supplementary_size : vg::MinimizerMapper
min_support_in_path() : vg::RepresentativeTraversalFinder
min_tail_anchor_length : vg::MultipathMapper
min_total_support_for_call : vg::SupportBasedSnarlCaller
min_unique_node_fraction : vg::MinimizerMapper
min_unique_per_strand : vg::Genotyper
MIN_VERSION : vg::Haplotypes::Header
MinDistanceClusterer() : vg::MinDistanceClusterer
minimizer_coverage_flank : vg::MinimizerMapper
minimizer_downsampling_max_window_length : vg::MinimizerMapper
minimizer_downsampling_window_count : vg::MinimizerMapper
minimizer_downweight_threshold : vg::IndexingParameters
minimizer_index : vg::HaplotypePartitioner, vg::MinimizerMapper
minimizer_index_type : vg::HaplotypePartitioner
minimizer_s : vg::IndexingParameters
minimizer_score_fraction : vg::MinimizerMapper
MinimizerConfig() : MinimizerConfig
MinimizerIndex : vg::MinimizerMapper
MinimizerMapper() : vg::MinimizerMapper
minimizers() : vg::MinimizerIndexParameters
minimum_distance_between() : vg::ZipCode
mismatch : ScoringOptions, vg::EditAlignmentScorer, vg::LoggedGapAlignmentScorer, vg::SSWAligner, vg::WFAAlignment, vg::WFATree
mismatch_positions : vg::GaplessExtension
mismatches() : vg::GaplessExtension, vg::LoggedGapAlignmentScorer, vg::WFAExtender::ErrorModel
missing_index_sets : vg::InsufficientInputException
MISSING_KEY : vg::GAFSorterRecord
mixture_weights : vg::SpliceStats
mode : HaplotypesConfig, vg::SummaryStatistics
mode_density : HaplotypesConfig
mode_invalid : HaplotypesConfig
mode_log_likelihood : vg::SpliceStats
mode_preprocess : HaplotypesConfig
mode_sample_graph : HaplotypesConfig
mode_sample_haplotypes : HaplotypesConfig
mode_statistics : HaplotypesConfig
model : vg::AlignmentChainModel, vg::MEMChainModel
motif_data : vg::SpliceStats
motif_frequency() : vg::SpliceStats
motif_is_reverse() : vg::SpliceStats
motif_matches : vg::SpliceRegion
motif_score() : vg::SpliceStats
motif_size() : vg::SpliceStats
move() : vg::SmallBitset
move_index() : vg::ZipCodeTree::distance_iterator
move_slice() : vg::ZipCodeForest
mp_aln_emitter : vg::ReadFilter< Read >
mp_aln_emitters : vg::MultipathAlignmentEmitter
mq_overlap : vg::Mapper
MSAConverter() : vg::MSAConverter
msg : vg::InsufficientInputException, vg::RewindPlanException, vg::SizeLimitExceededException
mtx : vg::ParallelKFFReader
mu : vg::FragmentLengthDistribution
multi_position_annotations : vg::AbstractReadSampler
multiallelic_sv_warned : vg::Constructor
multimap_to_all_paths : vg::Surjector
multipath_align() : vg::MultipathMapper
multipath_alignment_t() : vg::multipath_alignment_t
multipath_map() : vg::MultipathMapper
multipath_map_paired() : vg::MultipathMapper
MultipathAlignmentEmitter() : vg::MultipathAlignmentEmitter
MultipathAlignmentGraph() : vg::MultipathAlignmentGraph
MultipathMapper() : vg::MultipathMapper
MultipathProblem() : vg::MultipathProblem
multiplexer : vg::HTSWriter
mut_graph_impl : vg::IndexingParameters
mut_sampler : vg::NGSSimulator
mutable_connection() : vg::subpath_t
mutable_edit() : vg::path_mapping_t
mutable_mapping() : vg::path_t
mutable_next() : vg::subpath_t
mutable_path() : vg::subpath_t
mutable_position() : vg::path_mapping_t
mutable_quality() : vg::multipath_alignment_t
mutable_sequence() : vg::edit_t, vg::multipath_alignment_t
mutable_start() : vg::multipath_alignment_t
mutable_subpath() : vg::multipath_alignment_t
MutableGraphImplementation : vg::IndexingParameters
mutate() : vg::Sampler
mutate_edit() : vg::Sampler
mutation_alphabets : vg::NGSSimulator
mutex_graph : vg::Transcriptome
mutex_transcript_paths : vg::Transcriptome
my_names : Vectorizer
my_vectors : Vectorizer
my_xg : Vectorizer